Variant report

Variant	rs73850678
Chromosome Location	chr4:144077916-144077917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144077159..144080335-chr4:144083901..144086740,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs55722985	1.00[AMR][1000 genomes]
rs55725000	1.00[AMR][1000 genomes]
rs55747899	1.00[AMR][1000 genomes]
rs55760681	1.00[AMR][1000 genomes]
rs55895203	0.90[AFR][1000 genomes]
rs55915992	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56226922	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57440597	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58063714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58798255	1.00[AMR][1000 genomes]
rs59311168	1.00[AMR][1000 genomes]
rs59434608	1.00[AMR][1000 genomes]
rs59442113	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60222887	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60607336	1.00[AMR][1000 genomes]
rs61165291	1.00[AMR][1000 genomes]
rs61242181	1.00[AMR][1000 genomes]
rs61286725	1.00[AMR][1000 genomes]
rs6825768	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855499	1.00[AMR][1000 genomes]
rs73850675	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850676	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850679	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850680	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850684	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850685	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850686	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850687	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850688	1.00[AMR][1000 genomes]
rs73850691	1.00[AMR][1000 genomes]
rs73850693	1.00[AMR][1000 genomes]
rs73850694	1.00[AMR][1000 genomes]
rs7667499	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034895	chr4:143945139-144079655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144077200-144081600	Weak transcription	Ovary	ovary
2	chr4:144077800-144078400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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