Variant report

Variant	rs73854706
Chromosome Location	chr3:119502838-119502839
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10934499	0.99[EUR][1000 genomes]
rs11712211	0.99[EUR][1000 genomes]
rs13071341	0.99[EUR][1000 genomes]
rs1403527	1.00[EUR][1000 genomes]
rs2056530	0.99[EUR][1000 genomes]
rs2472670	0.99[EUR][1000 genomes]
rs2472671	0.99[EUR][1000 genomes]
rs2472672	0.99[EUR][1000 genomes]
rs2472673	0.99[EUR][1000 genomes]
rs2873951	1.00[EUR][1000 genomes]
rs4234666	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119497800-119503000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:119500000-119503200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr3:119500200-119514400	Weak transcription	Small Intestine	intestine
4	chr3:119500600-119503400	Active TSS	Liver	Liver
5	chr3:119500600-119504000	Active TSS	Fetal Intestine Large	intestine
6	chr3:119500600-119504400	Active TSS	Duodenum Mucosa	Duodenum
7	chr3:119501600-119503000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:119501800-119503000	Active TSS	Rectal Mucosa Donor 31	rectum
9	chr3:119501800-119503000	Enhancers	Stomach Mucosa	stomach
10	chr3:119501800-119503000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:119501800-119515000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:119502000-119505800	Enhancers	HepG2	liver
13	chr3:119502400-119503200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:119502600-119503000	Enhancers	Primary hematopoietic stem cells	blood
15	chr3:119502800-119503000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:119502800-119503000	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr3:119502800-119503200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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