Variant report

Variant	rs73854719
Chromosome Location	chr3:119528118-119528119
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:119528053-119528866	HL-60	blood:	n/a	chr3:119528600-119528613 chr3:119528320-119528333 chr3:119528290-119528299 chr3:119528322-119528331 chr3:119528603-119528610

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119527283..119529245-chr3:119900596..119902132,2	MCF-7	breast:
2	chr3:119527025..119528584-chr3:119529180..119532030,2	MCF-7	breast:

Variant related genes	Relation type
NR1I2	TF binding region
ENSG00000144852	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12721597	1.00[AFR][1000 genomes]
rs55907307	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119515400-119528600	Weak transcription	Colonic Mucosa	Colon
2	chr3:119516800-119534600	Weak transcription	HepG2	liver
3	chr3:119525000-119528200	Strong transcription	Fetal Intestine Large	intestine
4	chr3:119525000-119532400	Weak transcription	Small Intestine	intestine
5	chr3:119525200-119528600	Strong transcription	Fetal Intestine Small	intestine
6	chr3:119525200-119529000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:119525800-119528800	Strong transcription	Liver	Liver
8	chr3:119526600-119528400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:119527400-119528200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:119527400-119528200	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:119527800-119528200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:119527800-119528600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:119527800-119528600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:119527800-119528600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:119528000-119528200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr3:119528000-119528200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:119528000-119528600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr3:119528000-119528600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:119528000-119528600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:119528000-119529000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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