Variant report

Variant	rs73867496
Chromosome Location	chr3:142807620-142807621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142805513..142808227-chr3:142808677..142811250,2	K562	blood:
2	chr3:142806692..142808957-chr3:142860540..142862798,2	K562	blood:
3	chr3:142805683..142809398-chr3:142813217..142818159,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11914346	0.96[ASN][1000 genomes]
rs11924590	0.92[ASN][1000 genomes]
rs11926643	0.81[ASN][1000 genomes]
rs11928485	0.96[ASN][1000 genomes]
rs13327838	0.81[ASN][1000 genomes]
rs1531139	0.81[ASN][1000 genomes]
rs2124544	0.82[EUR][1000 genomes]
rs2353403	0.83[ASN][1000 genomes]
rs41374546	0.97[ASN][1000 genomes]
rs55644607	0.96[ASN][1000 genomes]
rs56022259	0.86[ASN][1000 genomes]
rs56216546	0.83[ASN][1000 genomes]
rs56407378	0.96[ASN][1000 genomes]
rs57654114	0.92[ASN][1000 genomes]
rs58124018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62276932	0.97[ASN][1000 genomes]
rs62276933	0.97[ASN][1000 genomes]
rs936198	0.97[ASN][1000 genomes]
rs9834271	0.80[ASN][1000 genomes]
rs9846508	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv2757893	chr3:142720230-142962932	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2759183	chr3:142720230-142964373	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv591921	chr3:142762487-142841740	Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142804400-142809200	Weak transcription	HSMMtube	muscle
2	chr3:142804400-142809400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:142806600-142807800	Enhancers	K562	blood
4	chr3:142807600-142808000	Enhancers	GM12878-XiMat	blood

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