Variant report

Variant	rs73868713
Chromosome Location	chr3:143005212-143005213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143003825..143006670-chr3:143017660..143020675,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72997837	1.00[AMR][1000 genomes]
rs7652045	1.00[AMR][1000 genomes]
rs9842834	1.00[AMR][1000 genomes]
rs9843767	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142973000-143017600	Weak transcription	Primary B cells from cord blood	blood
2	chr3:142983000-143013000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr3:143001400-143012600	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143002400-143010200	Weak transcription	Left Ventricle	heart
5	chr3:143002600-143008800	Weak transcription	Fetal Lung	lung
6	chr3:143002800-143006400	Enhancers	K562	blood
7	chr3:143002800-143014000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:143003600-143011600	Enhancers	Brain Hippocampus Middle	brain
9	chr3:143003800-143008000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:143004400-143008200	Enhancers	Brain Substantia Nigra	brain
11	chr3:143004400-143008600	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:143005000-143005600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:143005000-143006000	Enhancers	Stomach Mucosa	stomach
14	chr3:143005000-143006200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr3:143005000-143006600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:143005000-143006800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:143005000-143008600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:143005200-143006200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:143005200-143008800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr3:143005200-143008800	Enhancers	Brain Angular Gyrus	brain

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