Variant report

Variant	rs73902581
Chromosome Location	chr20:24528525-24528526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10222011	1.00[AMR][1000 genomes]
rs57330425	1.00[AMR][1000 genomes]
rs6106896	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106897	1.00[AMR][1000 genomes]
rs6114756	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114761	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114762	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114824	1.00[AMR][1000 genomes]
rs73341698	1.00[AMR][1000 genomes]
rs73901851	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8118433	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24523600-24530800	Weak transcription	Fetal Heart	heart
2	chr20:24523800-24528800	Strong transcription	H1 Cell Line	embryonic stem cell
3	chr20:24523800-24528800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:24525000-24528600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
6	chr20:24526600-24529400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:24527200-24528600	Weak transcription	Brain Angular Gyrus	brain
8	chr20:24527400-24528600	Weak transcription	Aorta	Aorta
9	chr20:24527400-24528600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr20:24527400-24528800	Weak transcription	Brain Substantia Nigra	brain
11	chr20:24527400-24530600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr20:24527400-24531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr20:24527400-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr20:24527600-24529000	Genic enhancers	Brain Hippocampus Middle	brain
15	chr20:24528400-24528600	ZNF genes & repeats	HMEC	breast
16	chr20:24528400-24530800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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