Variant report
| Variant | rs73902766 |
|---|---|
| Chromosome Location | chr20:24245216-24245217 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:24243101..24245973-chr20:24250065..24252649,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs35761129 | 1.00[AMR][1000 genomes] |
| rs36063187 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55658154 | 1.00[AMR][1000 genomes] |
| rs55904634 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56347325 | 0.91[AFR][1000 genomes] |
| rs56354135 | 0.91[AFR][1000 genomes] |
| rs58501060 | 1.00[AMR][1000 genomes] |
| rs59465726 | 1.00[AMR][1000 genomes] |
| rs7274088 | 0.91[AFR][1000 genomes] |
| rs73901975 | 0.91[AFR][1000 genomes] |
| rs73902001 | 0.91[AFR][1000 genomes] |
| rs73902764 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73902779 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73902799 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73902800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73902802 | 1.00[AMR][1000 genomes] |
| rs73905108 | 1.00[AMR][1000 genomes] |
| rs73905111 | 1.00[AMR][1000 genomes] |
| rs73905127 | 1.00[AMR][1000 genomes] |
| rs73905129 | 1.00[AMR][1000 genomes] |
| rs73905131 | 1.00[AMR][1000 genomes] |
| rs73905132 | 1.00[AMR][1000 genomes] |
| rs73905136 | 1.00[AMR][1000 genomes] |
| rs73905139 | 1.00[AMR][1000 genomes] |
| rs73905147 | 1.00[AMR][1000 genomes] |
| rs73905148 | 1.00[AMR][1000 genomes] |
| rs8120500 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv3328348 | chr20:24095746-24285830 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv833945 | chr20:24163437-24349462 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1058146 | chr20:24210196-24531087 | Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24239400-24246200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
