Variant report

Variant	rs73905111
Chromosome Location	chr20:24093616-24093617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs35761129	1.00[AMR][1000 genomes]
rs36063187	1.00[AMR][1000 genomes]
rs55658154	1.00[AMR][1000 genomes]
rs55904634	1.00[AMR][1000 genomes]
rs56212225	1.00[AMR][1000 genomes]
rs58501060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59465726	1.00[AMR][1000 genomes]
rs61224390	1.00[AMR][1000 genomes]
rs73902595	1.00[AMR][1000 genomes]
rs73902600	1.00[AMR][1000 genomes]
rs73902602	1.00[AMR][1000 genomes]
rs73902764	1.00[AMR][1000 genomes]
rs73902766	1.00[AMR][1000 genomes]
rs73905103	1.00[AMR][1000 genomes]
rs73905104	1.00[AMR][1000 genomes]
rs73905105	1.00[AMR][1000 genomes]
rs73905108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905110	1.00[AFR][1000 genomes]
rs73905127	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905129	1.00[AMR][1000 genomes]
rs73905131	1.00[AMR][1000 genomes]
rs73905132	1.00[AMR][1000 genomes]
rs73905136	1.00[AMR][1000 genomes]
rs73905139	1.00[AMR][1000 genomes]
rs73905147	1.00[AMR][1000 genomes]
rs73905148	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:24093600-24093800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24093600-24094200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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