Variant report

Variant	rs73905132
Chromosome Location	chr20:24119747-24119748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs35761129	1.00[AMR][1000 genomes]
rs36063187	1.00[AMR][1000 genomes]
rs55658154	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55904634	1.00[AMR][1000 genomes]
rs56212225	1.00[AMR][1000 genomes]
rs58501060	1.00[AMR][1000 genomes]
rs59465726	1.00[AMR][1000 genomes]
rs61224390	1.00[AMR][1000 genomes]
rs73902595	1.00[AMR][1000 genomes]
rs73902600	1.00[AMR][1000 genomes]
rs73902602	1.00[AMR][1000 genomes]
rs73902764	1.00[AMR][1000 genomes]
rs73902766	1.00[AMR][1000 genomes]
rs73902779	1.00[AMR][1000 genomes]
rs73905103	1.00[AMR][1000 genomes]
rs73905104	1.00[AMR][1000 genomes]
rs73905105	1.00[AMR][1000 genomes]
rs73905108	1.00[AMR][1000 genomes]
rs73905111	1.00[AMR][1000 genomes]
rs73905127	1.00[AMR][1000 genomes]
rs73905129	1.00[AMR][1000 genomes]
rs73905131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905139	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905147	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905148	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24111400-24120400	Enhancers	Placenta	Placenta
2	chr20:24114800-24119800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr20:24115800-24121200	Weak transcription	Pancreas	Pancrea
4	chr20:24118600-24119800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:24118800-24119800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:24119000-24119800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:24119000-24120000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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