Variant report

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr20:24129063-24129661	GM12878	blood:	n/a	n/a
2	ELF1	chr20:24129107-24129341	GM12878	blood:	n/a	n/a
3	USF2	chr20:24129055-24129360	GM12878	blood:	n/a	n/a
4	EP300	chr20:24129090-24129283	GM12878	blood:	n/a	n/a
5	BHLHE40	chr20:24128975-24129495	GM12878	blood:	n/a	n/a
6	MAZ	chr20:24129178-24129228	HepG2	liver:	n/a	n/a
7	TCF12	chr20:24129018-24129474	GM12878	blood:	n/a	n/a
8	SPI1	chr20:24128988-24129465	HL-60	blood:	n/a	n/a
9	RUNX3	chr20:24128925-24129316	GM12878	blood:	n/a	n/a
10	MAX	chr20:24128994-24129515	NB4	blood:	n/a	n/a
11	POLR2A	chr20:24128767-24129725	HL-60	blood:	n/a	n/a
12	USF1	chr20:24129003-24129354	GM12878	blood:	n/a	n/a
13	TCF3	chr20:24128998-24129595	GM12878	blood:	n/a	n/a
14	SPI1	chr20:24129078-24129406	GM12891	blood:	n/a	n/a
15	USF2	chr20:24129076-24129221	Hela-S3	cervix:	n/a	n/a
16	USF2	chr20:24129093-24129250	HepG2	liver:	n/a	n/a
17	RUNX3	chr20:24128955-24129373	GM12878	blood:	n/a	n/a
18	USF1	chr20:24129056-24129382	GM12878	blood:	n/a	n/a
19	POLR2A	chr20:24128892-24129674	HL-60	blood:	n/a	n/a
20	BHLHE40	chr20:24129055-24129401	K562	blood:	n/a	n/a
21	TCF12	chr20:24128989-24129413	GM12878	blood:	n/a	n/a
22	SPI1	chr20:24129067-24129389	GM12878	blood:	n/a	n/a
23	MYC	chr20:24129005-24129419	NB4	blood:	n/a	n/a
24	SPI1	chr20:24129029-24129335	GM12891	blood:	n/a	n/a
25	SPI1	chr20:24128838-24129624	HL-60	blood:	n/a	n/a
26	ELF1	chr20:24129105-24129381	GM12878	blood:	n/a	n/a
27	SPI1	chr20:24129138-24129360	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000236151	TF binding region

rSNPs within LD-proxies of this variant (count:28)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24123400-24130800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:24127200-24130000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:24127200-24130200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:24127400-24129600	Weak transcription	NHEK	skin
5	chr20:24127400-24130600	Weak transcription	Pancreas	Pancrea
6	chr20:24128000-24131200	ZNF genes & repeats	Dnd41	blood
7	chr20:24128400-24130600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr20:24128600-24130200	Weak transcription	Liver	Liver
9	chr20:24128600-24131000	Enhancers	Placenta	Placenta
10	chr20:24128800-24129600	Enhancers	GM12878-XiMat	blood
11	chr20:24129000-24129600	Enhancers	Fetal Thymus	thymus
12	chr20:24129000-24129800	ZNF genes & repeats	Esophagus	oesophagus
13	chr20:24129200-24129400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr20:24129200-24129600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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