Variant report

Variant	rs73915500
Chromosome Location	chr2:11852038-11852039
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11837517..11840283-chr2:11849750..11852700,2	MCF-7	breast:
2	chr2:11851055..11853217-chr2:11855001..11857096,3	MCF-7	breast:
3	chr2:11850587..11853159-chr2:11857216..11858736,3	K562	blood:
4	chr2:11850587..11853159-chr2:11857216..11858736,2	K562	blood:
5	chr2:11850515..11852161-chr2:11877592..11880491,2	MCF-7	breast:
6	chr2:11850883..11854568-chr2:11860179..11862646,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56037558	1.00[AMR][1000 genomes]
rs56122279	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56266446	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56958924	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58429439	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59002621	1.00[AMR][1000 genomes]
rs61153226	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61602903	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73915489	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73915494	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73915497	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73915498	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv469449	chr2:11808654-11854012	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv580972	chr2:11808654-11854012	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11844200-11854200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:11844600-11856400	Weak transcription	Psoas Muscle	Psoas
3	chr2:11848600-11852200	Weak transcription	Placenta	Placenta
4	chr2:11848800-11854600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:11848800-11855400	Weak transcription	Pancreas	Pancrea
6	chr2:11849000-11854400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:11849400-11852800	Enhancers	Brain Cingulate Gyrus	brain
8	chr2:11849800-11852800	Enhancers	NHLF	lung
9	chr2:11849800-11853200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:11849800-11853200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:11849800-11853400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:11850000-11852600	Enhancers	Brain Substantia Nigra	brain
13	chr2:11850000-11852600	Enhancers	Ovary	ovary
14	chr2:11850200-11852600	Enhancers	Brain Hippocampus Middle	brain
15	chr2:11850200-11852800	Enhancers	Brain Angular Gyrus	brain
16	chr2:11850400-11852200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:11850400-11853000	Enhancers	Brain Anterior Caudate	brain
18	chr2:11850600-11856400	Weak transcription	Hela-S3	cervix
19	chr2:11850800-11852600	Active TSS	Esophagus	oesophagus
20	chr2:11850800-11852600	Enhancers	Fetal Muscle Leg	muscle
21	chr2:11850800-11853200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:11850800-11856200	Weak transcription	Right Atrium	heart
23	chr2:11851000-11852600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr2:11851000-11852600	Enhancers	Adipose Nuclei	Adipose
25	chr2:11851200-11852400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:11851200-11852600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:11851200-11853000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr2:11851400-11852600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:11851400-11852600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr2:11851400-11852600	Weak transcription	HMEC	breast
31	chr2:11851400-11852600	Weak transcription	NHEK	skin
32	chr2:11851400-11853000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr2:11851400-11853200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr2:11851400-11856600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:11851400-11856600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr2:11851600-11853000	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr2:11851600-11855600	Weak transcription	Liver	Liver
38	chr2:11851800-11852200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:11851800-11853200	Enhancers	Aorta	Aorta
40	chr2:11851800-11856600	Weak transcription	Fetal Lung	lung
41	chr2:11851800-11856800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:11852000-11852600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
43	chr2:11852000-11853000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:11852000-11859200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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