Variant report

Variant	rs73924192
Chromosome Location	chr2:33449122-33449123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33445727..33447745-chr2:33448807..33450580,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12104905	1.00[AMR][1000 genomes]
rs12105049	1.00[AMR][1000 genomes]
rs12105569	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1454377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012599	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012645	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012647	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038528	1.00[AMR][1000 genomes]
rs55676641	1.00[AMR][1000 genomes]
rs56191261	1.00[AMR][1000 genomes]
rs57040194	1.00[AMR][1000 genomes]
rs57043920	1.00[AMR][1000 genomes]
rs57555315	1.00[AMR][1000 genomes]
rs58248415	1.00[AMR][1000 genomes]
rs58447746	1.00[AMR][1000 genomes]
rs59291317	1.00[AMR][1000 genomes]
rs61050968	1.00[AMR][1000 genomes]
rs61154196	1.00[AMR][1000 genomes]
rs61163843	1.00[AMR][1000 genomes]
rs6706960	1.00[AMR][1000 genomes]
rs6707278	1.00[AMR][1000 genomes]
rs6710588	1.00[AMR][1000 genomes]
rs6719885	1.00[AMR][1000 genomes]
rs6724967	1.00[AMR][1000 genomes]
rs6736870	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6739497	1.00[AMR][1000 genomes]
rs6741450	1.00[AMR][1000 genomes]
rs6752263	1.00[AMR][1000 genomes]
rs73924181	1.00[AMR][1000 genomes]
rs73924183	1.00[AMR][1000 genomes]
rs73924186	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73924195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73924197	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73925003	1.00[AMR][1000 genomes]
rs73925009	1.00[AMR][1000 genomes]
rs73925011	1.00[AMR][1000 genomes]
rs73925681	1.00[AMR][1000 genomes]
rs73925695	1.00[AMR][1000 genomes]
rs73925697	1.00[AMR][1000 genomes]
rs73925698	1.00[AMR][1000 genomes]
rs73925700	1.00[AMR][1000 genomes]
rs73927363	1.00[AMR][1000 genomes]
rs73927504	1.00[AMR][1000 genomes]
rs73927505	1.00[AMR][1000 genomes]
rs73927506	1.00[AMR][1000 genomes]
rs73927507	1.00[AMR][1000 genomes]
rs73927508	1.00[AMR][1000 genomes]
rs73929408	1.00[AMR][1000 genomes]
rs73929409	1.00[AMR][1000 genomes]
rs73929412	1.00[AMR][1000 genomes]
rs73929413	1.00[AMR][1000 genomes]
rs7594149	1.00[AMR][1000 genomes]
rs957131	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33403800-33489800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33414600-33455400	Weak transcription	Fetal Stomach	stomach
3	chr2:33436800-33455000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:33442600-33452200	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:33442600-33467600	Weak transcription	Ovary	ovary
6	chr2:33442800-33453400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:33442800-33471400	Weak transcription	Psoas Muscle	Psoas
8	chr2:33445600-33449200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:33446000-33455000	Weak transcription	Fetal Kidney	kidney
10	chr2:33446400-33449400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:33446400-33450400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:33446400-33451200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:33446400-33452600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:33446600-33451200	Weak transcription	K562	blood
15	chr2:33446600-33454800	Weak transcription	A549	lung
16	chr2:33446600-33461200	Weak transcription	HUVEC	blood vessel
17	chr2:33446800-33461200	Weak transcription	Fetal Lung	lung
18	chr2:33447000-33449200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:33447000-33449400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:33447000-33449400	Enhancers	NHEK	skin
21	chr2:33447200-33449200	Strong transcription	Left Ventricle	heart
22	chr2:33447400-33468200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr2:33447600-33449200	Strong transcription	Stomach Smooth Muscle	stomach
24	chr2:33447600-33452600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:33447800-33449200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr2:33447800-33449600	Genic enhancers	NHDF-Ad	bronchial
27	chr2:33447800-33451400	Weak transcription	Aorta	Aorta
28	chr2:33448000-33449400	Genic enhancers	NHLF	lung
29	chr2:33448000-33450600	Weak transcription	NH-A	brain
30	chr2:33448200-33450600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:33448200-33450800	Weak transcription	Liver	Liver
32	chr2:33448400-33461400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:33448600-33449400	Genic enhancers	Muscle Satellite Cultured Cells	--
34	chr2:33448600-33449400	Genic enhancers	Osteobl	bone
35	chr2:33448600-33451400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:33448800-33449200	Enhancers	Placenta	Placenta
37	chr2:33448800-33449400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:33448800-33449400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:33449000-33449200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr2:33449000-33449400	Enhancers	Fetal Heart	heart

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