Variant report

Variant	rs73924675
Chromosome Location	chr2:37676482-37676483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17020479	1.00[AMR][1000 genomes]
rs55723652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57538573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61330906	1.00[AMR][1000 genomes]
rs73924676	1.00[AMR][1000 genomes]
rs7557390	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37670000-37678400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:37672800-37676600	Weak transcription	Aorta	Aorta
3	chr2:37674600-37676600	Weak transcription	HSMM	muscle
4	chr2:37674800-37683600	Weak transcription	Psoas Muscle	Psoas
5	chr2:37675400-37678000	Enhancers	Osteobl	bone
6	chr2:37675800-37676800	Enhancers	Fetal Heart	heart
7	chr2:37675800-37678600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:37676000-37677000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:37676000-37678400	Enhancers	Primary hematopoietic stem cells	blood
10	chr2:37676000-37678600	Enhancers	Fetal Thymus	thymus
11	chr2:37676200-37677400	Weak transcription	Ovary	ovary
12	chr2:37676200-37678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:37676400-37677200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:37676400-37678200	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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