Variant report

Variant	rs73924676
Chromosome Location	chr2:37676864-37676865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17020479	1.00[AMR][1000 genomes]
rs55723652	1.00[AMR][1000 genomes]
rs57538573	1.00[AMR][1000 genomes]
rs61330906	1.00[AMR][1000 genomes]
rs73924675	1.00[AMR][1000 genomes]
rs7557390	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37670000-37678400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:37674800-37683600	Weak transcription	Psoas Muscle	Psoas
3	chr2:37675400-37678000	Enhancers	Osteobl	bone
4	chr2:37675800-37678600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr2:37676000-37677000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:37676000-37678400	Enhancers	Primary hematopoietic stem cells	blood
7	chr2:37676000-37678600	Enhancers	Fetal Thymus	thymus
8	chr2:37676200-37677400	Weak transcription	Ovary	ovary
9	chr2:37676200-37678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:37676400-37677200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:37676400-37678200	Enhancers	Fetal Kidney	kidney
12	chr2:37676600-37677000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr2:37676600-37677000	Enhancers	Fetal Lung	lung
14	chr2:37676600-37677000	Enhancers	HSMMtube	muscle
15	chr2:37676600-37677400	Enhancers	Rectal Smooth Muscle	rectum
16	chr2:37676600-37677600	Enhancers	NH-A	brain
17	chr2:37676600-37677800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:37676600-37677800	Enhancers	Aorta	Aorta
19	chr2:37676600-37677800	Enhancers	HUVEC	blood vessel
20	chr2:37676800-37677000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr2:37676800-37677200	Enhancers	Fetal Muscle Leg	muscle
22	chr2:37676800-37677400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr2:37676800-37677600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr2:37676800-37677600	Enhancers	Fetal Stomach	stomach
25	chr2:37676800-37677800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr2:37676800-37679400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:37676800-37682000	Weak transcription	Fetal Heart	heart

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