Variant report

Variant	rs73928531
Chromosome Location	chr19:36910015-36910016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:36909117-36910017	HUVEC	blood vessel:	n/a	n/a
2	MAZ	chr19:36908601-36910028	IMR90	lung:	n/a	n/a
3	NRF1	chr19:36909231-36910321	SK-N-SH	brain:	n/a	chr19:36909596-36909605 chr19:36909596-36909610 chr19:36909593-36909607 chr19:36909596-36909607
4	MAX	chr19:36908588-36910199	A549	lung:	n/a	n/a
5	RCOR1	chr19:36908014-36910259	IMR90	lung:	n/a	n/a
6	REST	chr19:36908887-36910110	H1-neurons	neurons:	n/a	chr19:36909264-36909284 chr19:36909182-36909195
7	CTCF	chr19:36909900-36910050	A549	lung:	n/a	n/a
8	POLR2A	chr19:36909182-36910029	PANC-1	pancreas:	n/a	n/a
9	HCFC1	chr19:36908888-36910378	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr19:36909073-36910065	PFSK-1	brain:	n/a	n/a
11	MAX	chr19:36908829-36910090	A549	lung:	n/a	n/a
12	POLR2A	chr19:36908894-36910029	H1-hESC	embryonic stem cell:	n/a	n/a
13	E2F6	chr19:36908747-36910120	A549	lung:	n/a	chr19:36909599-36909609 chr19:36909597-36909606 chr19:36909718-36909733

Variant related genes	Relation type
ENSG00000267142	TF binding region
ZFP82	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55846524	1.00[AMR][1000 genomes]
rs58119860	1.00[AMR][1000 genomes]
rs58361065	0.86[AFR][1000 genomes]
rs59329149	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928609	1.00[AMR][1000 genomes]
rs73928635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73928793	1.00[AMR][1000 genomes]
rs73928795	1.00[AMR][1000 genomes]
rs73931539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1067101	chr19:36901010-36956251	ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36908200-36910200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr19:36908200-36910200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr19:36908200-36910200	ZNF genes & repeats	Liver	Liver
4	chr19:36908200-36910200	Active TSS	NHLF	lung
5	chr19:36908400-36910200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:36908400-36910200	Active TSS	NHDF-Ad	bronchial
7	chr19:36908600-36910200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr19:36908800-36910200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr19:36908800-36910200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr19:36908800-36910200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr19:36908800-36910200	Active TSS	Brain Angular Gyrus	brain
12	chr19:36908800-36910200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr19:36908800-36910200	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr19:36908800-36910200	Active TSS	HSMM	muscle
15	chr19:36908800-36910200	Active TSS	HSMMtube	muscle
16	chr19:36908800-36910200	Active TSS	NH-A	brain
17	chr19:36908800-36910400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:36908800-36910400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr19:36909000-36910200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr19:36909000-36910200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr19:36909000-36910200	Active TSS	Brain Germinal Matrix	brain
22	chr19:36909000-36910200	Active TSS	Brain Hippocampus Middle	brain
23	chr19:36909000-36910200	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr19:36909000-36910200	Active TSS	Rectal Smooth Muscle	rectum
25	chr19:36909000-36910400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr19:36909200-36910200	Active TSS	Primary B cells from cord blood	blood
27	chr19:36909200-36910200	Active TSS	Primary T cells from cord blood	blood
28	chr19:36909200-36910200	Active TSS	Duodenum Mucosa	Duodenum
29	chr19:36909200-36910200	Active TSS	Fetal Muscle Trunk	muscle
30	chr19:36909200-36910200	Active TSS	Rectal Mucosa Donor 31	rectum
31	chr19:36909200-36910200	Active TSS	Stomach Mucosa	stomach
32	chr19:36909200-36910200	Active TSS	Thymus	Thymus
33	chr19:36909200-36910200	Active TSS	A549	lung
34	chr19:36909200-36910400	Active TSS	Fetal Brain Female	brain
35	chr19:36909400-36910200	Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr19:36909600-36910200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr19:36909800-36910200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
38	chr19:36909800-36910200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
39	chr19:36909800-36910200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr19:36909800-36910200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr19:36909800-36910200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr19:36909800-36910200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:36909800-36910200	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr19:36909800-36910200	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr19:36909800-36910200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr19:36909800-36910200	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr19:36909800-36910200	Flanking Active TSS	Osteobl	bone
48	chr19:36909800-36910400	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr19:36909800-36912000	Weak transcription	Spleen	Spleen
50	chr19:36910000-36910200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell

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