Variant report

Variant	rs73928609
Chromosome Location	chr19:36874539-36874540
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55846524	1.00[AMR][1000 genomes]
rs58119860	1.00[AMR][1000 genomes]
rs59329149	1.00[AMR][1000 genomes]
rs73928531	1.00[AMR][1000 genomes]
rs73928635	1.00[AMR][1000 genomes]
rs73928642	1.00[AMR][1000 genomes]
rs73928793	1.00[AMR][1000 genomes]
rs73928795	1.00[AMR][1000 genomes]
rs73931539	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36870600-36878200	Weak transcription	Fetal Brain Female	brain
2	chr19:36870600-36880400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr19:36870600-36880600	Weak transcription	Ovary	ovary
4	chr19:36870800-36878000	Weak transcription	Brain Germinal Matrix	brain
5	chr19:36870800-36882400	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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