Variant report

Variant	rs73931629
Chromosome Location	chr19:37079553-37079554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55885724	1.00[AFR][1000 genomes]
rs55981753	1.00[AFR][1000 genomes]
rs56836606	1.00[AFR][1000 genomes]
rs57422489	1.00[AFR][1000 genomes]
rs57586526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57678022	1.00[AFR][1000 genomes]
rs58078073	1.00[AFR][1000 genomes]
rs58361065	0.83[AFR][1000 genomes]
rs58403474	1.00[AFR][1000 genomes]
rs59329149	0.83[AFR][1000 genomes]
rs60132516	1.00[AFR][1000 genomes]
rs60808598	1.00[AFR][1000 genomes]
rs61082544	1.00[AFR][1000 genomes]
rs61481244	1.00[AFR][1000 genomes]
rs73929009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73929011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73929123	1.00[AFR][1000 genomes]
rs73929124	1.00[AFR][1000 genomes]
rs73929127	1.00[AFR][1000 genomes]
rs73929170	1.00[AFR][1000 genomes]
rs73929171	1.00[AFR][1000 genomes]
rs73929178	1.00[AFR][1000 genomes]
rs73931028	1.00[AFR][1000 genomes]
rs73931029	1.00[AFR][1000 genomes]
rs73931030	1.00[AFR][1000 genomes]
rs73931036	1.00[AFR][1000 genomes]
rs73931037	1.00[AFR][1000 genomes]
rs73931038	1.00[AFR][1000 genomes]
rs73931040	1.00[AFR][1000 genomes]
rs73931626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73931627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73931634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73931636	1.00[AFR][1000 genomes]
rs73931639	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3434386	chr19:37073454-37114509	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37065600-37081200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37065600-37095400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:37066000-37081200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr19:37066000-37081200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:37066600-37080600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:37066800-37081000	Strong transcription	Dnd41	blood
7	chr19:37066800-37091400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37067000-37080800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:37067000-37081200	ZNF genes & repeats	Liver	Liver
10	chr19:37067000-37081200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr19:37068800-37083000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr19:37070000-37095400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:37072000-37081800	Weak transcription	HUVEC	blood vessel
14	chr19:37072600-37080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:37072600-37080600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr19:37072600-37081200	Weak transcription	NHLF	lung
17	chr19:37072600-37082000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr19:37072800-37079800	Weak transcription	Pancreas	Pancrea
19	chr19:37072800-37080800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr19:37073000-37081800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:37073200-37079800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr19:37074000-37080600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr19:37074400-37080000	Weak transcription	HSMMtube	muscle
24	chr19:37075000-37080600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr19:37075200-37081400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:37075400-37080000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr19:37075400-37080400	ZNF genes & repeats	Aorta	Aorta
28	chr19:37075400-37080400	Strong transcription	Fetal Muscle Leg	muscle
29	chr19:37075400-37080600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr19:37075400-37080600	ZNF genes & repeats	Ovary	ovary
31	chr19:37075400-37081200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr19:37075400-37081200	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr19:37075600-37081000	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr19:37075600-37081400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr19:37075800-37080800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr19:37075800-37081000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
37	chr19:37075800-37081200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr19:37076000-37080200	Strong transcription	Fetal Muscle Trunk	muscle
39	chr19:37076000-37080400	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr19:37076000-37080600	Strong transcription	Brain Anterior Caudate	brain
41	chr19:37076000-37080600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr19:37076000-37080800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
43	chr19:37076000-37081200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr19:37076200-37080800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr19:37076200-37081200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
46	chr19:37076400-37080200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr19:37076400-37081000	Strong transcription	Primary B cells from peripheral blood	blood
48	chr19:37076600-37080400	Strong transcription	Brain Cingulate Gyrus	brain
49	chr19:37076800-37080000	Weak transcription	Colonic Mucosa	Colon
50	chr19:37076800-37080800	Strong transcription	Muscle Satellite Cultured Cells	--

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