Variant report

Variant	rs73936024
Chromosome Location	chr19:42963872-42963873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10518265	1.00[EUR][1000 genomes]
rs16975748	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975848	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975958	1.00[EUR][1000 genomes]
rs1903724	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34044249	1.00[EUR][1000 genomes]
rs34097578	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34147019	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34366776	1.00[EUR][1000 genomes]
rs34381435	1.00[EUR][1000 genomes]
rs34637823	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34734442	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34760209	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34923099	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35002034	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35038065	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35135831	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35213872	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35266309	1.00[EUR][1000 genomes]
rs35312827	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35349390	1.00[EUR][1000 genomes]
rs35409716	0.89[AMR][1000 genomes]
rs35544765	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35855384	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35917849	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35969273	1.00[EUR][1000 genomes]
rs3745238	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4635443	1.00[EUR][1000 genomes]
rs55697425	1.00[EUR][1000 genomes]
rs56271304	1.00[EUR][1000 genomes]
rs56312460	1.00[EUR][1000 genomes]
rs57516100	1.00[EUR][1000 genomes]
rs58405647	1.00[EUR][1000 genomes]
rs58845793	1.00[EUR][1000 genomes]
rs59983776	1.00[EUR][1000 genomes]
rs60389892	1.00[EUR][1000 genomes]
rs60993923	1.00[EUR][1000 genomes]
rs61661961	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7253354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932713	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73932727	1.00[EUR][1000 genomes]
rs73932730	1.00[EUR][1000 genomes]
rs73932732	1.00[EUR][1000 genomes]
rs73932734	1.00[EUR][1000 genomes]
rs73932736	1.00[EUR][1000 genomes]
rs73932737	1.00[EUR][1000 genomes]
rs73932738	1.00[EUR][1000 genomes]
rs73932739	1.00[EUR][1000 genomes]
rs73932741	1.00[EUR][1000 genomes]
rs73932742	1.00[EUR][1000 genomes]
rs73932744	1.00[EUR][1000 genomes]
rs73932746	1.00[EUR][1000 genomes]
rs73932747	1.00[EUR][1000 genomes]
rs73932748	1.00[EUR][1000 genomes]
rs73932750	1.00[EUR][1000 genomes]
rs73932751	1.00[EUR][1000 genomes]
rs73932752	1.00[EUR][1000 genomes]
rs73932754	1.00[EUR][1000 genomes]
rs73932761	1.00[EUR][1000 genomes]
rs73932762	1.00[EUR][1000 genomes]
rs73936020	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73936031	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73936032	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8105476	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8109269	1.00[EUR][1000 genomes]
rs8110316	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42952400-42964400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:42955400-42964000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr19:42955400-42964600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr19:42955800-42966400	Weak transcription	GM12878-XiMat	blood
5	chr19:42957000-42966000	Weak transcription	Left Ventricle	heart
6	chr19:42957400-42964600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr19:42957400-42970600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr19:42960000-42964600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr19:42960000-42970200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:42960200-42964600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr19:42960200-42970000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr19:42960200-42975600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:42960400-42965600	Weak transcription	Right Atrium	heart
14	chr19:42960400-42965800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr19:42960400-42965800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr19:42960400-42966000	Weak transcription	Esophagus	oesophagus
17	chr19:42960400-42971000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr19:42960400-42974200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr19:42960600-42965600	Weak transcription	HMEC	breast
20	chr19:42960600-42969800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr19:42961000-42966400	Weak transcription	Primary B cells from cord blood	blood
22	chr19:42961000-42970200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr19:42961600-42964000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr19:42961600-42966800	Weak transcription	Fetal Intestine Small	intestine
25	chr19:42961800-42964600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr19:42961800-42970000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr19:42961800-42970000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr19:42961800-42970200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:42961800-42970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr19:42961800-42970200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr19:42962800-42964000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr19:42963200-42964800	Strong transcription	Adipose Nuclei	Adipose
33	chr19:42963200-42967400	Enhancers	HepG2	liver
34	chr19:42963400-42964200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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