The 2.0 version of rSNPBase

Variant report

Variant rs73940343
Chromosome Location chr2:56144398-56144399
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:56116400-56144400 Weak transcription Lung lung
2 chr2:56129000-56144400 Weak transcription HSMMtube muscle
3 chr2:56129200-56150200 Weak transcription Pancreas Pancrea
4 chr2:56132000-56149000 Weak transcription Colon Smooth Muscle Colon
5 chr2:56135200-56146600 Weak transcription Brain Anterior Caudate brain
6 chr2:56136600-56145800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr2:56137400-56149400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr2:56138800-56146400 Weak transcription A549 lung
9 chr2:56138800-56149600 Transcr. at gene 5' and 3' HUVEC blood vessel
10 chr2:56141800-56146200 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr2:56142200-56149800 Weak transcription Gastric stomach
12 chr2:56142400-56149400 Weak transcription Right Ventricle heart
13 chr2:56142600-56149200 Weak transcription Stomach Smooth Muscle stomach
14 chr2:56142800-56146000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr2:56143000-56144600 Enhancers NHLF lung
16 chr2:56143000-56145800 Strong transcription NHEK skin
17 chr2:56143200-56144400 Weak transcription Muscle Satellite Cultured Cells --
18 chr2:56143200-56144600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr2:56143200-56144600 Weak transcription NHDF-Ad bronchial
20 chr2:56143400-56149000 Weak transcription Fetal Kidney kidney
21 chr2:56143600-56145000 Strong transcription Ovary ovary
22 chr2:56143600-56145200 Genic enhancers Adipose Nuclei Adipose
23 chr2:56143600-56147200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr2:56143600-56147600 Genic enhancers Breast Myoepithelial Primary Cells Breast
25 chr2:56143600-56148000 Strong transcription HMEC breast
26 chr2:56143800-56144600 Weak transcription Placenta Placenta
27 chr2:56143800-56145000 Strong transcription Fetal Stomach stomach
28 chr2:56143800-56145200 Genic enhancers Aorta Aorta
29 chr2:56143800-56145600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:56143800-56148600 Weak transcription Right Atrium heart
31 chr2:56143800-56150400 Weak transcription Spleen Spleen
32 chr2:56144000-56145200 Genic enhancers Osteobl bone
33 chr2:56144000-56146200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
34 chr2:56144000-56149800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr2:56144200-56145000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr2:56144200-56145000 Enhancers GM12878-XiMat blood
37 chr2:56144200-56145200 Strong transcription NH-A brain
38 chr2:56144200-56145800 Strong transcription Placenta Amnion Placenta Amnion
39 chr2:56144200-56147000 Weak transcription HSMM muscle
40 chr2:56144200-56148400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr2:56144200-56149000 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015