Variant report

Variant	rs739508
Chromosome Location	chr7:104054627-104054628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10224980	0.85[YRI][hapmap];0.89[AMR][1000 genomes]
rs10255597	0.85[YRI][hapmap]
rs10262774	1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10263003	1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273121	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10273435	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11763758	0.81[AMR][1000 genomes]
rs12705214	0.82[AMR][1000 genomes]
rs4730010	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs4730014	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs62485084	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979253	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7785837	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104053000-104055600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:104053600-104054800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:104053600-104055000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:104053800-104055000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:104054000-104055400	Enhancers	Brain Hippocampus Middle	brain
6	chr7:104054600-104054800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:104054600-104054800	Enhancers	Brain Germinal Matrix	brain
8	chr7:104054600-104055000	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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