Variant report

Variant	rs73952543
Chromosome Location	chr18:28566115-28566116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16961032	1.00[AMR][1000 genomes]
rs55727134	1.00[AMR][1000 genomes]
rs56327995	1.00[AMR][1000 genomes]
rs56883876	0.83[AMR][1000 genomes]
rs73952544	1.00[AMR][1000 genomes]
rs73952547	1.00[AMR][1000 genomes]
rs73952550	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833613	chr18:28446454-28623599	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv909515	chr18:28556767-28584556	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3439121	chr18:28563754-28568052	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28563000-28566800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr18:28565200-28567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:28565800-28566200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:28565800-28566200	Enhancers	Esophagus	oesophagus
5	chr18:28565800-28566200	Enhancers	Fetal Brain Male	brain
6	chr18:28565800-28566200	Enhancers	Lung	lung
7	chr18:28565800-28567200	Enhancers	NHEK	skin
8	chr18:28566000-28566200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:28566000-28567400	Weak transcription	Pancreas	Pancrea
10	chr18:28566000-28567400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr18:28566000-28567800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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