Variant report
| Variant | rs73954506 |
|---|---|
| Chromosome Location | chr18:28693423-28693424 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000134755 | Chromatin interaction |
| ENSG00000265888 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11874340 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs11874411 | 0.88[EUR][1000 genomes] |
| rs11874916 | 0.91[EUR][1000 genomes] |
| rs11876103 | 0.88[EUR][1000 genomes] |
| rs11877259 | 0.91[EUR][1000 genomes] |
| rs16961206 | 0.91[EUR][1000 genomes] |
| rs16961253 | 0.84[AMR][1000 genomes] |
| rs16961254 | 0.84[AMR][1000 genomes] |
| rs16961256 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs28379393 | 0.85[EUR][1000 genomes] |
| rs6506883 | 0.91[EUR][1000 genomes] |
| rs7235130 | 0.91[EUR][1000 genomes] |
| rs73415516 | 0.91[EUR][1000 genomes] |
| rs73415572 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs73954515 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs8086813 | 0.91[EUR][1000 genomes] |
| rs9957742 | 0.85[EUR][1000 genomes] |
| rs9960485 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530788 | chr18:28596461-28751891 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv962465 | chr18:28689021-28697558 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3360998 | chr18:28693111-28881812 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28691800-28694600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
