Variant report

Variant	rs73956517
Chromosome Location	chr2:128070669-128070670
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:128070558-128072295	GM12878	blood:	n/a	chr2:128071118-128071127 chr2:128071115-128071128 chr2:128071122-128071131 chr2:128071116-128071129

Variant related genes	Relation type
RNU6-1147P	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10209483	0.89[ASN][1000 genomes]
rs11680949	0.89[ASN][1000 genomes]
rs11691088	0.89[ASN][1000 genomes]
rs2069894	1.00[ASN][1000 genomes]
rs3732209	0.89[ASN][1000 genomes]
rs4150436	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4150452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56291216	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57347433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58965651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6755652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72845979	0.89[ASN][1000 genomes]
rs72845982	0.89[ASN][1000 genomes]
rs73953605	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956519	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956522	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956525	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956526	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8179521	1.00[ASN][1000 genomes]
rs9282675	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128052400-128070800	Weak transcription	Colonic Mucosa	Colon
2	chr2:128052400-128071200	Weak transcription	Fetal Brain Male	brain
3	chr2:128052800-128070800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:128052800-128071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:128052800-128071800	Weak transcription	NHLF	lung
6	chr2:128053000-128070800	Weak transcription	K562	blood
7	chr2:128053000-128071600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:128058600-128085600	Strong transcription	Primary B cells from cord blood	blood
9	chr2:128059400-128082800	Strong transcription	Liver	Liver
10	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:128059800-128093000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:128061200-128077600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:128062000-128077600	Strong transcription	Fetal Intestine Large	intestine
16	chr2:128062000-128077800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:128062000-128083200	Strong transcription	Primary T cells from cord blood	blood
18	chr2:128062000-128085000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr2:128062000-128086600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:128062400-128070800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:128062400-128094000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr2:128062600-128071800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:128062600-128077600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:128062600-128077800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:128062600-128077800	Strong transcription	Dnd41	blood
26	chr2:128062600-128078000	Strong transcription	Fetal Thymus	thymus
27	chr2:128062600-128083400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr2:128062600-128083400	Strong transcription	Thymus	Thymus
29	chr2:128062600-128089400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:128062800-128077800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr2:128062800-128098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:128063000-128076200	Strong transcription	Brain Anterior Caudate	brain
33	chr2:128063000-128076800	Strong transcription	Osteobl	bone
34	chr2:128063000-128077400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:128063000-128078400	Strong transcription	Adipose Nuclei	Adipose
36	chr2:128063000-128080200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:128063000-128089200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:128063200-128076600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:128063200-128080200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:128063400-128077800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr2:128063400-128077800	Strong transcription	Fetal Lung	lung
42	chr2:128063400-128084800	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr2:128063400-128098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:128063600-128078000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:128063600-128081200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr2:128063600-128083400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr2:128063600-128091800	Strong transcription	Placenta	Placenta
48	chr2:128063800-128072400	Strong transcription	Brain Substantia Nigra	brain
49	chr2:128063800-128075400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr2:128063800-128077200	Strong transcription	A549	lung

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