Variant report

Variant	rs73956519
Chromosome Location	chr2:128082146-128082147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128081925..128082881-chr2:128236509..128237545,4	K562	blood:
2	chr2:128081920..128082830-chr2:128210667..128211822,4	K562	blood:
3	chr2:128082013..128082848-chr2:128236646..128237511,2	MCF-7	breast:
4	chr2:128081908..128082904-chr2:128173401..128174161,4	K562	blood:
5	chr2:128081990..128082927-chr2:128236340..128237420,5	MCF-7	breast:
6	chr2:128081799..128083189-chr2:128210681..128212115,13	MCF-7	breast:
7	chr2:128080706..128082331-chr2:128236038..128238787,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4150436	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4150452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56291216	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57347433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58965651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6755652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73953605	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73956517	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73956526	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9282675	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377291	chr2:128077236-128083877	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128058600-128085600	Strong transcription	Primary B cells from cord blood	blood
2	chr2:128059400-128082800	Strong transcription	Liver	Liver
3	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:128059800-128093000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:128062000-128083200	Strong transcription	Primary T cells from cord blood	blood
8	chr2:128062000-128085000	Strong transcription	Duodenum Mucosa	Duodenum
9	chr2:128062000-128086600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:128062400-128094000	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr2:128062600-128083400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr2:128062600-128083400	Strong transcription	Thymus	Thymus
13	chr2:128062600-128089400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:128062800-128098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:128063000-128089200	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:128063400-128084800	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr2:128063400-128098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:128063600-128083400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr2:128063600-128091800	Strong transcription	Placenta	Placenta
20	chr2:128063800-128083400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:128064200-128083800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:128064200-128090000	Weak transcription	Psoas Muscle	Psoas
23	chr2:128065000-128100200	Weak transcription	Stomach Mucosa	stomach
24	chr2:128066400-128090600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr2:128068200-128092200	Weak transcription	Pancreas	Pancrea
26	chr2:128069000-128117000	Weak transcription	Small Intestine	intestine
27	chr2:128071600-128089000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr2:128072200-128090000	Weak transcription	Colonic Mucosa	Colon
29	chr2:128072200-128098200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr2:128072200-128101400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr2:128072200-128109600	Weak transcription	Esophagus	oesophagus
32	chr2:128072200-128111800	Weak transcription	K562	blood
33	chr2:128072600-128112000	Weak transcription	NHEK	skin
34	chr2:128073200-128088800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr2:128074800-128106800	Weak transcription	Spleen	Spleen
36	chr2:128076000-128095400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr2:128076600-128082200	Weak transcription	NHLF	lung
38	chr2:128076600-128102800	Weak transcription	Hela-S3	cervix
39	chr2:128077000-128090000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:128077000-128094000	Weak transcription	Gastric	stomach
41	chr2:128077000-128116200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr2:128077200-128089200	Weak transcription	Lung	lung
43	chr2:128077200-128122800	Weak transcription	Aorta	Aorta
44	chr2:128077800-128086600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr2:128078200-128082800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:128078200-128093400	Strong transcription	Dnd41	blood
47	chr2:128078400-128084800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr2:128078400-128097400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr2:128078600-128082200	Strong transcription	Fetal Lung	lung
50	chr2:128078600-128083400	Strong transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links