Variant report

Variant	rs73962059
Chromosome Location	chr2:145425991-145425992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs55647125	1.00[AMR][1000 genomes]
rs55665103	1.00[AMR][1000 genomes]
rs55701936	1.00[AMR][1000 genomes]
rs55836609	1.00[AMR][1000 genomes]
rs55924315	1.00[AMR][1000 genomes]
rs55992490	1.00[AMR][1000 genomes]
rs56049026	1.00[AMR][1000 genomes]
rs56412031	1.00[AMR][1000 genomes]
rs56790676	1.00[AMR][1000 genomes]
rs56824932	1.00[AMR][1000 genomes]
rs57273989	1.00[AMR][1000 genomes]
rs59039216	1.00[AMR][1000 genomes]
rs59274820	1.00[AMR][1000 genomes]
rs59373132	1.00[AMR][1000 genomes]
rs60176990	1.00[AMR][1000 genomes]
rs60328211	1.00[AMR][1000 genomes]
rs61697170	1.00[AMR][1000 genomes]
rs73962055	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962062	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962063	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962064	1.00[AMR][1000 genomes]
rs73962065	1.00[AMR][1000 genomes]
rs73962068	1.00[AMR][1000 genomes]
rs73962070	1.00[AMR][1000 genomes]
rs73962071	1.00[AMR][1000 genomes]
rs73962074	1.00[AMR][1000 genomes]
rs73962078	1.00[AMR][1000 genomes]
rs73962079	1.00[AMR][1000 genomes]
rs73962081	1.00[AMR][1000 genomes]
rs73962084	1.00[AMR][1000 genomes]
rs73962086	1.00[AMR][1000 genomes]
rs73962088	1.00[AMR][1000 genomes]
rs73962089	1.00[AMR][1000 genomes]
rs73962094	1.00[AMR][1000 genomes]
rs73962096	1.00[AMR][1000 genomes]
rs73962101	1.00[AMR][1000 genomes]
rs73963909	1.00[AMR][1000 genomes]
rs73963910	1.00[AMR][1000 genomes]
rs73963912	1.00[AMR][1000 genomes]
rs73963913	1.00[AMR][1000 genomes]
rs73963914	1.00[AMR][1000 genomes]
rs73963915	1.00[AMR][1000 genomes]
rs73963916	1.00[AMR][1000 genomes]
rs73963917	1.00[AMR][1000 genomes]
rs73963918	1.00[AMR][1000 genomes]
rs73963920	1.00[AMR][1000 genomes]
rs73963921	1.00[AMR][1000 genomes]
rs73963922	1.00[AMR][1000 genomes]
rs73963923	1.00[AMR][1000 genomes]
rs73963924	1.00[AMR][1000 genomes]
rs73963925	1.00[AMR][1000 genomes]
rs73963926	1.00[AMR][1000 genomes]
rs73963930	1.00[AMR][1000 genomes]
rs73963931	1.00[AMR][1000 genomes]
rs73963934	1.00[AMR][1000 genomes]
rs73963938	1.00[AMR][1000 genomes]
rs73963941	1.00[AMR][1000 genomes]
rs73963943	1.00[AMR][1000 genomes]
rs73963945	1.00[AMR][1000 genomes]
rs73963947	1.00[AMR][1000 genomes]
rs73963955	1.00[AMR][1000 genomes]
rs73963956	1.00[AMR][1000 genomes]
rs73963957	1.00[AMR][1000 genomes]
rs73963960	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948474	chr2:145035890-145436665	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145416800-145431400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:145419000-145432800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:145421400-145426600	Weak transcription	Primary B cells from cord blood	blood
4	chr2:145421600-145427200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr2:145422000-145426400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr2:145422600-145429000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr2:145423000-145440600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:145423800-145427200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:145424000-145433000	Weak transcription	HMEC	breast
10	chr2:145424600-145428600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:145425600-145427200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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