Variant report

Variant	rs73962070
Chromosome Location	chr2:145444075-145444076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:145440158..145446045-chr2:145446990..145450479,6	K562	blood:
2	chr2:145438508..145440477-chr2:145442503..145444386,2	K562	blood:

Variant related genes	Relation type
ENSG00000234940	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs55647125	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55665103	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55701936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55836609	1.00[AMR][1000 genomes]
rs55924315	1.00[AMR][1000 genomes]
rs55992490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56049026	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56412031	1.00[AMR][1000 genomes]
rs56790676	1.00[AMR][1000 genomes]
rs56824932	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57273989	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59039216	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59274820	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59373132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60176990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60328211	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61697170	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962055	1.00[AMR][1000 genomes]
rs73962059	1.00[AMR][1000 genomes]
rs73962062	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962063	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962065	1.00[AMR][1000 genomes]
rs73962068	1.00[AMR][1000 genomes]
rs73962071	1.00[AMR][1000 genomes]
rs73962074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962079	1.00[AMR][1000 genomes]
rs73962081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962086	1.00[AMR][1000 genomes]
rs73962088	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962089	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962094	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962096	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962101	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963909	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963910	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963912	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963913	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963914	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963915	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963916	1.00[AMR][1000 genomes]
rs73963917	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963920	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963921	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963923	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963924	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963925	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963926	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963930	1.00[AMR][1000 genomes]
rs73963931	1.00[AMR][1000 genomes]
rs73963934	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963938	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963941	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963945	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963947	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963955	1.00[AMR][1000 genomes]
rs73963956	1.00[AMR][1000 genomes]
rs73963957	1.00[AMR][1000 genomes]
rs73963960	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145438800-145452800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:145441800-145444200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:145442600-145446000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr2:145443000-145444200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr2:145443400-145446600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:145443600-145445000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:145443600-145445400	Enhancers	Primary hematopoietic stem cells	blood
8	chr2:145443600-145446800	Enhancers	Primary B cells from cord blood	blood
9	chr2:145443800-145444400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:145443800-145445000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links