Variant report

Variant	rs73962071
Chromosome Location	chr2:145449072-145449073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:145449008-145449208	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F4	chr2:145448972-145449075	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:145445504..145447495-chr2:145448613..145450868,2	K562	blood:

Variant related genes	Relation type
ENSG00000234940	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs55647125	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55665103	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55701936	1.00[AMR][1000 genomes]
rs55836609	1.00[AMR][1000 genomes]
rs55924315	1.00[AMR][1000 genomes]
rs55992490	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56049026	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56412031	1.00[AMR][1000 genomes]
rs56790676	1.00[AMR][1000 genomes]
rs56824932	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57273989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59039216	1.00[AMR][1000 genomes]
rs59274820	1.00[AMR][1000 genomes]
rs59373132	1.00[AMR][1000 genomes]
rs60176990	1.00[AMR][1000 genomes]
rs60328211	1.00[AMR][1000 genomes]
rs61697170	1.00[AMR][1000 genomes]
rs73962055	1.00[AMR][1000 genomes]
rs73962059	1.00[AMR][1000 genomes]
rs73962062	1.00[AMR][1000 genomes]
rs73962063	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962064	1.00[AMR][1000 genomes]
rs73962065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962068	1.00[AMR][1000 genomes]
rs73962070	1.00[AMR][1000 genomes]
rs73962074	1.00[AMR][1000 genomes]
rs73962078	1.00[AMR][1000 genomes]
rs73962079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962081	1.00[AMR][1000 genomes]
rs73962084	1.00[AMR][1000 genomes]
rs73962086	1.00[AMR][1000 genomes]
rs73962088	1.00[AMR][1000 genomes]
rs73962089	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962094	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962096	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73962101	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963909	1.00[AMR][1000 genomes]
rs73963910	1.00[AMR][1000 genomes]
rs73963912	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963913	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963914	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963915	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963916	1.00[AMR][1000 genomes]
rs73963917	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963920	1.00[AMR][1000 genomes]
rs73963921	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963922	1.00[AMR][1000 genomes]
rs73963923	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963924	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963925	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963926	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963930	1.00[AMR][1000 genomes]
rs73963931	1.00[AMR][1000 genomes]
rs73963934	1.00[AMR][1000 genomes]
rs73963938	1.00[AMR][1000 genomes]
rs73963941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963943	1.00[AMR][1000 genomes]
rs73963945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963955	1.00[AMR][1000 genomes]
rs73963956	1.00[AMR][1000 genomes]
rs73963957	1.00[AMR][1000 genomes]
rs73963960	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv529501	chr2:145257682-145485605	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145438800-145452800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:145446000-145449600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr2:145449000-145452400	Enhancers	Primary neutrophils fromperipheralblood	blood

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