Variant report
Variant | rs73962079 |
---|---|
Chromosome Location | chr2:145458144-145458145 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-ARHGAP15-16 | chr2:145456944-145465439 | NONHSAT074810 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs55647125 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs55665103 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs55701936 | 1.00[AMR][1000 genomes] |
rs55836609 | 1.00[AMR][1000 genomes] |
rs55924315 | 1.00[AMR][1000 genomes] |
rs55992490 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56049026 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56412031 | 1.00[AMR][1000 genomes] |
rs56790676 | 1.00[AMR][1000 genomes] |
rs56824932 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57273989 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs59039216 | 1.00[AMR][1000 genomes] |
rs59274820 | 1.00[AMR][1000 genomes] |
rs59373132 | 1.00[AMR][1000 genomes] |
rs60176990 | 1.00[AMR][1000 genomes] |
rs60328211 | 1.00[AMR][1000 genomes] |
rs61697170 | 1.00[AMR][1000 genomes] |
rs73962055 | 1.00[AMR][1000 genomes] |
rs73962059 | 1.00[AMR][1000 genomes] |
rs73962062 | 1.00[AMR][1000 genomes] |
rs73962063 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73962064 | 1.00[AMR][1000 genomes] |
rs73962065 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73962068 | 1.00[AMR][1000 genomes] |
rs73962070 | 1.00[AMR][1000 genomes] |
rs73962071 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73962074 | 1.00[AMR][1000 genomes] |
rs73962078 | 1.00[AMR][1000 genomes] |
rs73962081 | 1.00[AMR][1000 genomes] |
rs73962084 | 1.00[AMR][1000 genomes] |
rs73962086 | 1.00[AMR][1000 genomes] |
rs73962088 | 1.00[AMR][1000 genomes] |
rs73962089 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73962094 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73962096 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73962101 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963909 | 1.00[AMR][1000 genomes] |
rs73963910 | 1.00[AMR][1000 genomes] |
rs73963912 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963913 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963914 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963915 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963916 | 1.00[AMR][1000 genomes] |
rs73963917 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963918 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963920 | 1.00[AMR][1000 genomes] |
rs73963921 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963922 | 1.00[AMR][1000 genomes] |
rs73963923 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963924 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963925 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963926 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963930 | 1.00[AMR][1000 genomes] |
rs73963931 | 1.00[AMR][1000 genomes] |
rs73963934 | 1.00[AMR][1000 genomes] |
rs73963938 | 1.00[AMR][1000 genomes] |
rs73963941 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963943 | 1.00[AMR][1000 genomes] |
rs73963945 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963947 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73963955 | 1.00[AMR][1000 genomes] |
rs73963956 | 1.00[AMR][1000 genomes] |
rs73963957 | 1.00[AMR][1000 genomes] |
rs73963960 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1002563 | chr2:145182201-145863253 | Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | nsv535957 | chr2:145182201-145863253 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
3 | nsv529501 | chr2:145257682-145485605 | Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
4 | nsv834397 | chr2:145439528-145608628 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:145450400-145469200 | Weak transcription | Aorta | Aorta |
2 | chr2:145457200-145464600 | Enhancers | Primary monocytes fromperipheralblood | blood |
3 | chr2:145457400-145459800 | Enhancers | Primary neutrophils fromperipheralblood | blood |
4 | chr2:145457600-145458600 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
5 | chr2:145457800-145463600 | Enhancers | Primary hematopoietic stem cells short term culture | blood |