Variant report

Variant	rs7396552
Chromosome Location	chr11:16988268-16988269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16983360..16985149-chr11:16987896..16990823,2	MCF-7	breast:
2	chr11:16976807..16979737-chr11:16986276..16990868,5	MCF-7	breast:
3	chr11:16980630..16982721-chr11:16985840..16988789,2	MCF-7	breast:
4	chr11:16983037..16985172-chr11:16987078..16988742,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10741713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024087	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024090	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418111	0.83[JPT][hapmap]
rs16933675	0.83[JPT][hapmap]
rs16933680	0.86[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs16933682	0.86[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs16933683	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16933684	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs177551	0.81[ASN][1000 genomes]
rs177554	0.83[ASN][1000 genomes]
rs177559	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177560	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177561	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1860024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860025	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2057788	0.83[JPT][hapmap]
rs2108603	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215086	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353367	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2883150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35005405	0.88[ASN][1000 genomes]
rs35109048	0.90[ASN][1000 genomes]
rs369457	0.83[JPT][hapmap]
rs371905	0.83[JPT][hapmap]
rs381815	0.88[JPT][hapmap]
rs387849	0.83[JPT][hapmap]
rs388968	0.80[JPT][hapmap]
rs390974	0.83[JPT][hapmap]
rs393633	0.88[JPT][hapmap]
rs397343	0.83[JPT][hapmap]
rs397373	0.87[JPT][hapmap]
rs400085	0.83[JPT][hapmap]
rs400458	0.83[JPT][hapmap]
rs401820	0.83[JPT][hapmap]
rs406890	0.83[JPT][hapmap]
rs407354	0.88[JPT][hapmap]
rs414219	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs414992	0.88[JPT][hapmap]
rs420975	0.83[JPT][hapmap]
rs425325	0.88[JPT][hapmap]
rs428840	0.87[JPT][hapmap]
rs428933	0.83[JPT][hapmap]
rs430211	0.83[JPT][hapmap]
rs431208	0.83[JPT][hapmap]
rs432046	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs433212	0.83[JPT][hapmap]
rs433225	0.83[JPT][hapmap]
rs434761	0.82[JPT][hapmap]
rs434899	0.81[JPT][hapmap]
rs435206	0.86[JPT][hapmap]
rs440212	0.83[JPT][hapmap]
rs445146	0.81[JPT][hapmap]
rs445205	0.80[CHD][hapmap];0.88[JPT][hapmap]
rs446518	0.87[JPT][hapmap]
rs448671	0.88[JPT][hapmap]
rs450828	0.83[JPT][hapmap]
rs452414	0.83[JPT][hapmap]
rs452745	0.82[JPT][hapmap]
rs454869	0.83[JPT][hapmap]
rs4756875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4756876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757445	0.90[ASN][1000 genomes]
rs4757449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757454	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757456	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486329	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111470	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs758402	0.83[ASN][1000 genomes]
rs7924696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926335	0.83[JPT][hapmap]
rs7929137	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs982811	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
3	chr11:16975400-16990600	Weak transcription	Spleen	Spleen
4	chr11:16978600-16988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:16981400-16989000	Weak transcription	Brain Anterior Caudate	brain
6	chr11:16981800-17002800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:16982200-16999000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:16982200-17003800	Weak transcription	Right Ventricle	heart
9	chr11:16982600-16989000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:16983800-16988600	Weak transcription	HepG2	liver
11	chr11:16984800-16988400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:16985200-16997600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:16985400-16997600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:16986000-16989600	Weak transcription	GM12878-XiMat	blood
15	chr11:16986800-16995000	Enhancers	Stomach Mucosa	stomach
16	chr11:16987000-16990400	Enhancers	Pancreas	Pancrea
17	chr11:16987600-16989600	Enhancers	Fetal Intestine Small	intestine
18	chr11:16987600-16990000	Enhancers	Colonic Mucosa	Colon
19	chr11:16987600-16990200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:16987800-16988400	Enhancers	Gastric	stomach
21	chr11:16987800-16989800	Enhancers	Fetal Lung	lung
22	chr11:16987800-16990000	Enhancers	Fetal Kidney	kidney
23	chr11:16988000-16993800	Enhancers	Fetal Intestine Large	intestine
24	chr11:16988200-16988400	Enhancers	Duodenum Mucosa	Duodenum
25	chr11:16988200-16988400	Enhancers	Lung	lung
26	chr11:16988200-16988400	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr11:16988200-16992000	Enhancers	Liver	Liver
28	chr11:16988200-16993800	Enhancers	Rectal Mucosa Donor 31	rectum

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