Variant report

Variant	rs73976816
Chromosome Location	chr2:181984488-181984489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181984288..181986201-chr2:181987328..181989334,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234663	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11904405	0.94[EUR][1000 genomes]
rs56977169	0.96[ASN][1000 genomes]
rs59260686	0.88[ASN][1000 genomes]
rs62180166	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180168	0.94[EUR][1000 genomes]
rs62180169	0.94[EUR][1000 genomes]
rs62180200	0.83[EUR][1000 genomes]
rs6433896	0.94[EUR][1000 genomes]
rs6719497	0.94[EUR][1000 genomes]
rs6738120	0.94[EUR][1000 genomes]
rs6758061	0.94[EUR][1000 genomes]
rs73025698	0.96[ASN][1000 genomes]
rs73027403	0.96[ASN][1000 genomes]
rs73027409	0.96[ASN][1000 genomes]
rs73027412	0.96[ASN][1000 genomes]
rs73027417	0.96[ASN][1000 genomes]
rs73027433	0.96[ASN][1000 genomes]
rs73027437	0.96[ASN][1000 genomes]
rs73027439	0.96[ASN][1000 genomes]
rs73027441	0.96[ASN][1000 genomes]
rs73027445	0.96[ASN][1000 genomes]
rs73027455	0.96[ASN][1000 genomes]
rs73027457	0.96[ASN][1000 genomes]
rs73027466	0.96[ASN][1000 genomes]
rs73027468	0.96[ASN][1000 genomes]
rs73027474	0.96[ASN][1000 genomes]
rs73027482	0.96[ASN][1000 genomes]
rs73027499	0.92[ASN][1000 genomes]
rs73027502	0.96[ASN][1000 genomes]
rs73029106	0.92[ASN][1000 genomes]
rs73029172	0.92[ASN][1000 genomes]
rs73029178	0.92[ASN][1000 genomes]
rs73029179	0.92[ASN][1000 genomes]
rs73029181	0.92[ASN][1000 genomes]
rs73029183	0.92[ASN][1000 genomes]
rs73029186	0.92[ASN][1000 genomes]
rs73029188	0.92[ASN][1000 genomes]
rs7577144	0.94[EUR][1000 genomes]
rs997716	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv459954	chr2:181975252-182040293	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583910	chr2:181975252-182040293	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181973800-181985000	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr2:181974000-181985200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:181981000-181985000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr2:181981400-181984800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:181981400-181988600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:181982600-181985200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:181982800-181985000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:181983600-181988400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:181984200-181986000	Enhancers	Primary T helper cells fromperipheralblood	blood

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