Variant report
| Variant | rs73977148 |
|---|---|
| Chromosome Location | chr2:181835066-181835067 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:181826154..181829123-chr2:181833838..181836698,3 | K562 | blood: | |
| 2 | chr2:181829308..181831127-chr2:181833538..181836179,2 | K562 | blood: | |
| 3 | chr2:181834069..181839836-chr2:181842561..181845920,7 | MCF-7 | breast: | |
| 4 | chr2:181829627..181832228-chr2:181834679..181836392,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170035 | Chromatin interaction |
| ENSG00000236153 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:55)
| rs_ID | r2[population] |
|---|---|
| rs11885073 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11885499 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11890538 | 1.00[AMR][1000 genomes] |
| rs11891901 | 1.00[AMR][1000 genomes] |
| rs11896331 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11898536 | 0.95[AFR][1000 genomes] |
| rs11899193 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11901821 | 1.00[AMR][1000 genomes] |
| rs11902135 | 1.00[AMR][1000 genomes] |
| rs11902832 | 1.00[AMR][1000 genomes] |
| rs16867374 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55742474 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55980983 | 1.00[AMR][1000 genomes] |
| rs56276437 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56370920 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57670948 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57698592 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59304478 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59850603 | 1.00[AMR][1000 genomes] |
| rs60753078 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61244658 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6704898 | 1.00[AMR][1000 genomes] |
| rs6715119 | 1.00[AMR][1000 genomes] |
| rs6716249 | 1.00[AMR][1000 genomes] |
| rs6717911 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6721914 | 1.00[AMR][1000 genomes] |
| rs6737799 | 1.00[AMR][1000 genomes] |
| rs6740342 | 1.00[AMR][1000 genomes] |
| rs6751625 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73974706 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73974713 | 1.00[AMR][1000 genomes] |
| rs73974714 | 1.00[AMR][1000 genomes] |
| rs73974721 | 1.00[AMR][1000 genomes] |
| rs73974754 | 1.00[AMR][1000 genomes] |
| rs73974755 | 1.00[AMR][1000 genomes] |
| rs73974756 | 1.00[AMR][1000 genomes] |
| rs73974761 | 1.00[AMR][1000 genomes] |
| rs73974765 | 1.00[AMR][1000 genomes] |
| rs73974766 | 1.00[AMR][1000 genomes] |
| rs73976805 | 1.00[AMR][1000 genomes] |
| rs73976807 | 1.00[AMR][1000 genomes] |
| rs73976817 | 1.00[AMR][1000 genomes] |
| rs73976819 | 1.00[AMR][1000 genomes] |
| rs73976820 | 1.00[AMR][1000 genomes] |
| rs73976867 | 1.00[AMR][1000 genomes] |
| rs73977146 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73977147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73977149 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73977152 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73977153 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73977154 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73977156 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7570421 | 1.00[AMR][1000 genomes] |
| rs9967843 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9967879 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv875476 | chr2:181767757-181854997 | Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
