Variant report

Variant	rs73980158
Chromosome Location	chr17:16381048-16381049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16380591..16384775-chr17:16394815..16396691,3	MCF-7	breast:
2	chr17:16377199..16379387-chr17:16380643..16382299,2	K562	blood:
3	chr17:16379752..16382103-chr17:16386990..16389784,2	MCF-7	breast:
4	chr17:16380912..16382469-chr17:16382575..16385405,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181350	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73980142	0.84[AFR][1000 genomes]
rs73980164	1.00[AMR][1000 genomes]
rs73980166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1061463	chr17:16245878-16490691	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
7	nsv543216	chr17:16245878-16490691	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
8	nsv1065254	chr17:16252880-16389930	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
9	nsv428668	chr17:16265210-16455285	Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases
10	nsv1063941	chr17:16357086-16424098	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16373000-16388800	Weak transcription	Gastric	stomach
2	chr17:16373400-16386000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:16374200-16381800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr17:16374200-16387800	Weak transcription	Brain Angular Gyrus	brain
5	chr17:16374400-16387800	Weak transcription	Brain Germinal Matrix	brain
6	chr17:16374600-16387800	Weak transcription	Brain Hippocampus Middle	brain
7	chr17:16374800-16381600	Weak transcription	Colonic Mucosa	Colon
8	chr17:16374800-16386000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr17:16374800-16387800	Weak transcription	Brain Anterior Caudate	brain
10	chr17:16375000-16386200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr17:16375200-16390400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr17:16376800-16387600	Weak transcription	Fetal Lung	lung
13	chr17:16377000-16389000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr17:16377200-16383400	Enhancers	Fetal Muscle Trunk	muscle
15	chr17:16377200-16387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr17:16377600-16382400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr17:16378000-16386400	Weak transcription	Fetal Brain Female	brain
18	chr17:16378800-16384200	Weak transcription	Fetal Heart	heart
19	chr17:16378800-16384400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr17:16379600-16381600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr17:16379600-16383200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr17:16379800-16383000	Enhancers	NHDF-Ad	bronchial
23	chr17:16380400-16381200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr17:16380400-16381200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr17:16380400-16381200	Bivalent Enhancer	HepG2	liver
26	chr17:16380400-16381200	Enhancers	HUVEC	blood vessel
27	chr17:16380400-16381400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr17:16380400-16381400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr17:16380400-16381400	Enhancers	Adipose Nuclei	Adipose
30	chr17:16380400-16381400	Enhancers	Fetal Stomach	stomach
31	chr17:16380400-16381400	Enhancers	Ovary	ovary
32	chr17:16380400-16381400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr17:16380400-16381400	Enhancers	Hela-S3	cervix
34	chr17:16380400-16381400	Enhancers	NH-A	brain
35	chr17:16380400-16381600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr17:16380400-16381800	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr17:16380400-16382000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr17:16380400-16382000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr17:16380400-16382000	Enhancers	Osteobl	bone
40	chr17:16380400-16382200	Enhancers	NHLF	lung
41	chr17:16380400-16382400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr17:16380400-16382400	Enhancers	Duodenum Mucosa	Duodenum
43	chr17:16380400-16382600	Enhancers	Colon Smooth Muscle	Colon
44	chr17:16380400-16382600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr17:16380400-16382800	Enhancers	Fetal Intestine Large	intestine
46	chr17:16380400-16383000	Genic enhancers	Fetal Intestine Small	intestine
47	chr17:16380400-16383200	Enhancers	Placenta	Placenta
48	chr17:16380400-16383400	Enhancers	Fetal Muscle Leg	muscle
49	chr17:16380600-16381200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr17:16380600-16381200	Enhancers	Placenta Amnion	Placenta Amnion

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