Variant report

Variant	rs74014805
Chromosome Location	chr15:52912256-52912257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52909963..52913999-chr15:52916519..52920050,4	MCF-7	breast:
2	chr15:52911044..52913155-chr15:52914885..52916943,2	K562	blood:
3	chr15:52908250..52909787-chr15:52911134..52913662,2	K562	blood:
4	chr15:52911171..52913383-chr15:52919987..52922783,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12101294	1.00[EUR][1000 genomes]
rs28403097	1.00[EUR][1000 genomes]
rs28515720	1.00[EUR][1000 genomes]
rs56346629	1.00[EUR][1000 genomes]
rs56710422	1.00[EUR][1000 genomes]
rs57072856	1.00[EUR][1000 genomes]
rs57094771	1.00[EUR][1000 genomes]
rs57960122	1.00[EUR][1000 genomes]
rs60407782	1.00[EUR][1000 genomes]
rs60882420	1.00[EUR][1000 genomes]
rs61364465	1.00[EUR][1000 genomes]
rs7173312	1.00[EUR][1000 genomes]
rs74014803	1.00[EUR][1000 genomes]
rs74016851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv833006	chr15:52825954-53040462	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv457140	chr15:52901433-52968746	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1049534	chr15:52903314-53022926	Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52861200-52925200	Weak transcription	Stomach Mucosa	stomach
2	chr15:52861800-52934800	Weak transcription	Right Ventricle	heart
3	chr15:52869400-52945400	Weak transcription	Small Intestine	intestine
4	chr15:52871800-52967600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:52872200-52933800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:52872600-52920800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:52873400-52928000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:52874200-52917000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:52874800-52944200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:52875400-52916200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:52882200-52920000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:52882400-52926000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr15:52885600-52945200	Weak transcription	Spleen	Spleen
14	chr15:52891400-52927600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:52899000-52920400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:52899600-52917000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:52899600-52944400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:52900600-52944000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr15:52900800-52945200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:52902200-52943800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:52902400-52914200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:52902400-52916400	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:52902400-52925200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:52902400-52934800	Weak transcription	NH-A	brain
25	chr15:52902600-52914000	Weak transcription	Lung	lung
26	chr15:52902600-52915800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:52902600-52916400	Weak transcription	Colon Smooth Muscle	Colon
28	chr15:52902600-52927400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:52902600-52942000	Weak transcription	HUVEC	blood vessel
30	chr15:52902800-52916400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:52903400-52925400	Weak transcription	Brain Germinal Matrix	brain
32	chr15:52903400-52933800	Weak transcription	Fetal Heart	heart
33	chr15:52903400-52943800	Weak transcription	Hela-S3	cervix
34	chr15:52903400-52944000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:52903600-52942400	Weak transcription	Dnd41	blood
36	chr15:52903600-52945400	Weak transcription	Colonic Mucosa	Colon
37	chr15:52904000-52914600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:52904000-52922800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr15:52904000-52934400	Weak transcription	Fetal Brain Male	brain
40	chr15:52904000-52943400	Weak transcription	Fetal Kidney	kidney
41	chr15:52904000-52945400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:52904000-52956800	Weak transcription	Esophagus	oesophagus
43	chr15:52904800-52928400	Weak transcription	Osteobl	bone
44	chr15:52905200-52915400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:52906000-52912400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:52906000-52915400	Weak transcription	Brain Substantia Nigra	brain
47	chr15:52906000-52915800	Weak transcription	Fetal Brain Female	brain
48	chr15:52906200-52913600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:52906200-52915400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:52906200-52916000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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