Variant report

Variant	rs74018011
Chromosome Location	chr15:58506747-58506748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58504835..58508448-chr15:58511770..58515596,3	K562	blood:
2	chr15:58505987..58508184-chr15:59784928..59787328,2	K562	blood:
3	chr15:58355281..58357769-chr15:58504795..58507676,2	K562	blood:

Variant related genes	Relation type
ENSG00000259285	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs28666827	1.00[AMR][1000 genomes]
rs56897769	1.00[AMR][1000 genomes]
rs57558739	1.00[AMR][1000 genomes]
rs58403699	1.00[AMR][1000 genomes]
rs59302123	1.00[AMR][1000 genomes]
rs59710194	1.00[AMR][1000 genomes]
rs59721837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60724513	1.00[AMR][1000 genomes]
rs74016548	1.00[AMR][1000 genomes]
rs74016582	1.00[AMR][1000 genomes]
rs74016583	1.00[AMR][1000 genomes]
rs74016588	1.00[AMR][1000 genomes]
rs74016592	1.00[AMR][1000 genomes]
rs74016597	1.00[AMR][1000 genomes]
rs74016602	1.00[AMR][1000 genomes]
rs74018009	1.00[AMR][1000 genomes]
rs74018010	1.00[AMR][1000 genomes]
rs74018023	1.00[AMR][1000 genomes]
rs74018024	1.00[AMR][1000 genomes]
rs74018025	1.00[AMR][1000 genomes]
rs9920853	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58502800-58516200	Weak transcription	NHEK	skin
2	chr15:58504600-58507400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:58504800-58507400	Enhancers	NHDF-Ad	bronchial
4	chr15:58505000-58507000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:58505000-58507200	Enhancers	Osteobl	bone
6	chr15:58505200-58507200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:58505200-58513600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:58505400-58506800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr15:58505400-58507000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:58505800-58506800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:58505800-58507000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:58505800-58507000	Weak transcription	Spleen	Spleen
13	chr15:58505800-58516200	Weak transcription	Right Atrium	heart
14	chr15:58506200-58507600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:58506400-58515000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:58506400-58515200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:58506600-58520200	Weak transcription	Liver	Liver

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