Variant report

Variant	rs74024007
Chromosome Location	chr15:76156603-76156604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:76156496-76157451	K562	blood:	n/a	chr15:76157006-76157016 chr15:76156994-76157003
2	JUN	chr15:76156457-76157707	K562	blood:	n/a	n/a
3	EP300	chr15:76156563-76157361	K562	blood:	n/a	chr15:76156992-76157006 chr15:76156950-76156964 chr15:76156951-76156965 chr15:76156949-76156963
4	MAFK	chr15:76156601-76157036	K562	blood:	n/a	n/a
5	TBL1XR1	chr15:76156481-76157487	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:76133451..76137775-chr15:76156108..76161375,6	MCF-7	breast:
2	chr15:76134659..76136703-chr15:76156027..76158190,3	MCF-7	breast:
3	chr15:76154276..76157270-chr15:76157615..76160562,3	K562	blood:
4	chr15:76135011..76136849-chr15:76154600..76156725,2	K562	blood:
5	chr15:76136933..76140770-chr15:76154598..76157335,3	K562	blood:

Variant related genes	Relation type
UBE2Q2	TF binding region
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:169)

rs_ID	r²[population]
rs1039547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13379955	1.00[EUR][1000 genomes]
rs1394122	1.00[EUR][1000 genomes]
rs1498196	1.00[EUR][1000 genomes]
rs1498197	1.00[EUR][1000 genomes]
rs1498198	1.00[EUR][1000 genomes]
rs1503955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532783	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562403	1.00[EUR][1000 genomes]
rs1695365	1.00[EUR][1000 genomes]
rs16967747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs170830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1874956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1910510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1976328	1.00[EUR][1000 genomes]
rs2133099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2133409	1.00[EUR][1000 genomes]
rs2133410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2441928	1.00[EUR][1000 genomes]
rs2454209	1.00[EUR][1000 genomes]
rs2454212	1.00[EUR][1000 genomes]
rs2454470	1.00[EUR][1000 genomes]
rs2454472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2455897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2460801	1.00[EUR][1000 genomes]
rs2469038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2469040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2593275	1.00[EUR][1000 genomes]
rs2593281	1.00[EUR][1000 genomes]
rs2593302	1.00[EUR][1000 genomes]
rs2604405	1.00[EUR][1000 genomes]
rs2648437	1.00[EUR][1000 genomes]
rs2655126	1.00[EUR][1000 genomes]
rs2655137	1.00[EUR][1000 genomes]
rs2947239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2959851	1.00[EUR][1000 genomes]
rs334923	1.00[EUR][1000 genomes]
rs334937	1.00[EUR][1000 genomes]
rs334939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334940	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs334941	1.00[EUR][1000 genomes]
rs334951	1.00[EUR][1000 genomes]
rs335673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335675	0.85[EUR][1000 genomes]
rs335676	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335678	1.00[EUR][1000 genomes]
rs335679	1.00[EUR][1000 genomes]
rs335683	1.00[EUR][1000 genomes]
rs335684	1.00[EUR][1000 genomes]
rs335687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335693	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs335694	1.00[EUR][1000 genomes]
rs335695	1.00[EUR][1000 genomes]
rs335700	1.00[EUR][1000 genomes]
rs335701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335710	0.85[EUR][1000 genomes]
rs335713	1.00[EUR][1000 genomes]
rs335717	1.00[EUR][1000 genomes]
rs335724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs335733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4482249	1.00[EUR][1000 genomes]
rs4489969	1.00[EUR][1000 genomes]
rs4886750	0.85[EUR][1000 genomes]
rs55665712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55719276	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55782145	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55828994	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139080	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56167836	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56173902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56218266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57011816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57127155	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57141410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57429900	1.00[EUR][1000 genomes]
rs57737646	1.00[EUR][1000 genomes]
rs57968453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57971067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57973358	1.00[EUR][1000 genomes]
rs58044283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58170668	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58399164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58789594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59143042	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59690620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59819402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59839117	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60088262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60155009	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60191258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60817295	1.00[EUR][1000 genomes]
rs60846313	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61240117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61521312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62027568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180064	1.00[EUR][1000 genomes]
rs7181550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182720	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024005	1.00[EUR][1000 genomes]
rs74024006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024011	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024014	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024015	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024016	1.00[EUR][1000 genomes]
rs74024017	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024019	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024020	1.00[EUR][1000 genomes]
rs74024021	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024022	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024023	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024029	1.00[EUR][1000 genomes]
rs74024030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024038	1.00[EUR][1000 genomes]
rs74024039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024043	1.00[EUR][1000 genomes]
rs74024044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024049	1.00[EUR][1000 genomes]
rs74024051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028766	1.00[EUR][1000 genomes]
rs8030469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030948	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8031263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034430	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8035611	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036952	1.00[EUR][1000 genomes]
rs8038729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9672219	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv974601	chr15:76139204-76160467	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76137200-76166200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:76137600-76165000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:76137800-76165800	Weak transcription	Liver	Liver
4	chr15:76137800-76166000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:76137800-76188400	Weak transcription	Brain Anterior Caudate	brain
6	chr15:76138000-76179600	Weak transcription	Small Intestine	intestine
7	chr15:76138200-76161800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:76138200-76166000	Weak transcription	Aorta	Aorta
9	chr15:76138200-76166000	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:76138200-76166000	Weak transcription	Pancreas	Pancrea
11	chr15:76138200-76166000	Weak transcription	Spleen	Spleen
12	chr15:76138200-76183000	Weak transcription	Hela-S3	cervix
13	chr15:76138200-76195200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:76138200-76195400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:76138400-76184000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:76138800-76166000	Weak transcription	Esophagus	oesophagus
17	chr15:76138800-76169200	Weak transcription	Psoas Muscle	Psoas
18	chr15:76140000-76161800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:76140000-76165800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:76140000-76184000	Weak transcription	Fetal Kidney	kidney
21	chr15:76140400-76166000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:76140600-76165600	Weak transcription	Fetal Brain Male	brain
23	chr15:76141400-76195200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:76141600-76161800	Weak transcription	Brain Germinal Matrix	brain
25	chr15:76141600-76166000	Weak transcription	NHLF	lung
26	chr15:76142000-76161800	Weak transcription	Ovary	ovary
27	chr15:76144800-76165800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:76145200-76195200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr15:76145600-76161600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:76146000-76157800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:76146200-76166000	Weak transcription	Right Ventricle	heart
32	chr15:76146400-76161800	Weak transcription	HMEC	breast
33	chr15:76146400-76166000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:76146400-76166000	Weak transcription	Lung	lung
35	chr15:76146600-76158600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr15:76146600-76161800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr15:76146800-76164200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:76147800-76159400	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:76148400-76159000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr15:76148400-76159400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:76148400-76166000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:76148600-76161800	Weak transcription	Adipose Nuclei	Adipose
43	chr15:76148600-76162000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:76149000-76161800	Weak transcription	Fetal Intestine Large	intestine
45	chr15:76149000-76195600	Weak transcription	Colonic Mucosa	Colon
46	chr15:76149400-76157800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:76149400-76161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:76149400-76166000	Weak transcription	Fetal Intestine Small	intestine
49	chr15:76149600-76157200	Weak transcription	Osteobl	bone
50	chr15:76149600-76161800	Weak transcription	Muscle Satellite Cultured Cells	--

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