Variant report

Variant	rs74024021
Chromosome Location	chr15:76205660-76205661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76195569..76197871-chr15:76205442..76207733,2	K562	blood:
2	chr15:76195569..76197871-chr15:76204617..76208764,4	K562	blood:
3	chr15:76136320..76138116-chr15:76204520..76207096,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 171 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs1039547	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13379955	0.83[EUR][1000 genomes]
rs1394122	0.83[EUR][1000 genomes]
rs1498196	0.83[EUR][1000 genomes]
rs1498197	0.83[EUR][1000 genomes]
rs1498198	0.83[EUR][1000 genomes]
rs1503955	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1532783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1562403	0.83[EUR][1000 genomes]
rs1695365	0.83[EUR][1000 genomes]
rs16967747	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs170830	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1874955	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1874956	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1910510	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1976328	0.83[EUR][1000 genomes]
rs2133099	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2133408	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2133409	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2133410	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2405578	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2441928	0.83[EUR][1000 genomes]
rs2454209	0.83[EUR][1000 genomes]
rs2454212	0.83[EUR][1000 genomes]
rs2454470	0.83[EUR][1000 genomes]
rs2454472	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2455897	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2460795	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2460796	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2460801	0.83[EUR][1000 genomes]
rs2469038	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2469040	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2593275	0.83[EUR][1000 genomes]
rs2593281	0.83[EUR][1000 genomes]
rs2593302	0.83[EUR][1000 genomes]
rs2604405	0.83[EUR][1000 genomes]
rs2648437	0.83[EUR][1000 genomes]
rs2655126	0.83[EUR][1000 genomes]
rs2655137	0.83[EUR][1000 genomes]
rs2947239	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2959851	0.83[EUR][1000 genomes]
rs334923	0.83[EUR][1000 genomes]
rs334937	0.83[EUR][1000 genomes]
rs334939	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs334940	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs334941	0.83[EUR][1000 genomes]
rs334951	0.83[EUR][1000 genomes]
rs335673	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335674	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335676	1.00[AMR][1000 genomes]
rs335678	0.83[EUR][1000 genomes]
rs335679	0.83[EUR][1000 genomes]
rs335683	0.83[EUR][1000 genomes]
rs335684	0.83[EUR][1000 genomes]
rs335687	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335693	1.00[AMR][1000 genomes]
rs335694	0.83[EUR][1000 genomes]
rs335695	0.83[EUR][1000 genomes]
rs335700	0.83[EUR][1000 genomes]
rs335701	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335713	0.83[EUR][1000 genomes]
rs335717	0.83[EUR][1000 genomes]
rs335724	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335725	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335726	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335728	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335729	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335730	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335731	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335732	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs335733	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4482249	0.83[EUR][1000 genomes]
rs4489969	0.83[EUR][1000 genomes]
rs55665712	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55719276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55782145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55828994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56139080	0.83[EUR][1000 genomes]
rs56167836	0.83[EUR][1000 genomes]
rs56173902	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56218266	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57011816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57127155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57141410	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57429900	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs57737646	0.83[EUR][1000 genomes]
rs57968453	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57971067	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57973358	0.83[EUR][1000 genomes]
rs58044283	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58170668	1.00[AMR][1000 genomes]
rs58399164	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58717562	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58789594	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59143042	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59690620	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59819402	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59839117	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60088262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60155009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60191258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60817295	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60846313	0.83[EUR][1000 genomes]
rs61240117	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61521312	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62027568	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7168988	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7173697	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7174280	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7174365	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7175758	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7180064	0.83[EUR][1000 genomes]
rs7181550	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7182720	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024005	0.83[EUR][1000 genomes]
rs74024006	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024007	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024011	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs74024014	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024015	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs74024016	0.83[EUR][1000 genomes]
rs74024017	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs74024019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024020	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs74024022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024028	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024029	0.83[EUR][1000 genomes]
rs74024030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024032	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024038	0.83[EUR][1000 genomes]
rs74024039	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024041	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024042	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024043	0.83[EUR][1000 genomes]
rs74024044	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024045	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024048	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024049	0.83[EUR][1000 genomes]
rs74024051	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024052	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024053	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024059	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024060	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024063	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024064	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024065	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024071	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74024073	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8025372	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8028084	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8028766	0.83[EUR][1000 genomes]
rs8030469	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8030948	1.00[AMR][1000 genomes]
rs8031263	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8033005	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8034430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8035611	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8036952	0.83[EUR][1000 genomes]
rs8038729	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9672219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9672952	0.86[AFR][1000 genomes]
rs974718	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76197000-76205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:76197000-76206200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr15:76197000-76210800	Weak transcription	Aorta	Aorta
4	chr15:76197000-76214600	Weak transcription	Small Intestine	intestine
5	chr15:76197200-76206000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:76197200-76206000	Weak transcription	Brain Angular Gyrus	brain
7	chr15:76197200-76206200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:76197200-76206600	Weak transcription	Thymus	Thymus
9	chr15:76197200-76216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:76197200-76216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:76197600-76206000	Weak transcription	Brain Substantia Nigra	brain
12	chr15:76197600-76210200	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:76197800-76205800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:76197800-76206600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr15:76197800-76206800	Weak transcription	Lung	lung
16	chr15:76197800-76214400	Weak transcription	Stomach Mucosa	stomach
17	chr15:76197800-76217400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:76198000-76205800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:76198000-76206800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:76198000-76206800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:76198000-76214400	Weak transcription	Esophagus	oesophagus
22	chr15:76198000-76214400	Weak transcription	Pancreas	Pancrea
23	chr15:76198000-76214600	Weak transcription	Right Ventricle	heart
24	chr15:76198000-76231600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:76198200-76206000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:76198200-76206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:76198200-76208000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:76198200-76232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr15:76198400-76208600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:76198400-76214200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:76198400-76225000	Weak transcription	Fetal Kidney	kidney
32	chr15:76198600-76206400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:76198600-76217000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr15:76198600-76226400	Weak transcription	Fetal Brain Male	brain
35	chr15:76198800-76206000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:76199000-76205800	Weak transcription	HepG2	liver
37	chr15:76199000-76208600	Weak transcription	NHLF	lung
38	chr15:76199000-76215800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:76199200-76205800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr15:76199200-76212000	Weak transcription	Psoas Muscle	Psoas
41	chr15:76200400-76205800	Weak transcription	HSMMtube	muscle
42	chr15:76201000-76206600	Weak transcription	Left Ventricle	heart
43	chr15:76201200-76206000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:76201200-76206800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:76201200-76207600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:76201200-76214400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:76201800-76206400	Weak transcription	NHEK	skin
48	chr15:76201800-76207200	Weak transcription	Fetal Intestine Small	intestine
49	chr15:76201800-76208600	Weak transcription	Fetal Heart	heart
50	chr15:76202000-76205800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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