Variant report

Variant	rs74024112
Chromosome Location	chr15:76727590-76727591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16968200	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs283786	1.00[EUR][1000 genomes]
rs28528891	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28842532	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56944949	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61128127	1.00[EUR][1000 genomes]
rs6495203	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024107	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024114	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024115	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74026416	1.00[EUR][1000 genomes]
rs74026430	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74026434	1.00[EUR][1000 genomes]
rs74026435	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9944271	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76711600-76728400	Weak transcription	Placenta	Placenta
2	chr15:76711600-76767200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:76717000-76739000	Weak transcription	Gastric	stomach
4	chr15:76718000-76732800	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:76718600-76727600	Weak transcription	Brain Germinal Matrix	brain
6	chr15:76718600-76730400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:76718800-76732000	Weak transcription	Fetal Stomach	stomach
8	chr15:76718800-76736200	Weak transcription	Lung	lung
9	chr15:76720200-76731600	Weak transcription	Brain Angular Gyrus	brain
10	chr15:76720800-76763600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:76721000-76728200	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:76721600-76740200	Weak transcription	Primary B cells from cord blood	blood
13	chr15:76721800-76734600	Weak transcription	Brain Anterior Caudate	brain
14	chr15:76723000-76730000	Weak transcription	Fetal Intestine Large	intestine
15	chr15:76723000-76739400	Weak transcription	Fetal Intestine Small	intestine
16	chr15:76723000-76757600	Weak transcription	Aorta	Aorta
17	chr15:76724600-76749400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:76725000-76727600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:76725000-76730800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:76725200-76731600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:76725200-76733400	Weak transcription	Liver	Liver
22	chr15:76725400-76727800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:76725400-76727800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:76725800-76728000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:76725800-76731000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:76725800-76754400	Weak transcription	Ovary	ovary
27	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
28	chr15:76726000-76727600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr15:76726000-76747200	Weak transcription	Primary T cells from cord blood	blood
30	chr15:76726400-76729000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:76726400-76733800	Weak transcription	Fetal Heart	heart
32	chr15:76726600-76728200	Weak transcription	Adipose Nuclei	Adipose
33	chr15:76726800-76731400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:76727400-76731200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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