Variant report

Variant	rs74024432
Chromosome Location	chr15:79020254-79020255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58572268	0.89[AFR][1000 genomes]
rs74024429	0.89[AFR][1000 genomes]
rs74024430	0.89[AFR][1000 genomes]
rs74024433	1.00[AFR][1000 genomes]
rs74024434	1.00[AFR][1000 genomes]
rs74024444	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv974606	chr15:78996783-79048337	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv904431	chr15:79006442-79155088	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79019200-79020400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:79019400-79020400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr15:79019400-79022000	Enhancers	A549	lung
4	chr15:79019600-79020400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:79019600-79020400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:79019600-79020400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr15:79019600-79020800	Enhancers	NH-A	brain
8	chr15:79019600-79021400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:79019800-79020400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:79020000-79020400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr15:79020000-79020400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr15:79020000-79020800	Enhancers	Fetal Stomach	stomach
13	chr15:79020200-79020400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:79020200-79021200	Enhancers	Stomach Smooth Muscle	stomach
15	chr15:79020200-79021600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:79020200-79021600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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