Variant report

Variant	rs74024627
Chromosome Location	chr15:77110556-77110557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12101854	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16968490	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16968545	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2629032	1.00[EUR][1000 genomes]
rs28502726	1.00[EUR][1000 genomes]
rs28574883	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28757741	1.00[EUR][1000 genomes]
rs28804114	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55682754	1.00[EUR][1000 genomes]
rs55737539	1.00[EUR][1000 genomes]
rs57365998	1.00[EUR][1000 genomes]
rs57366798	1.00[EUR][1000 genomes]
rs58934799	1.00[EUR][1000 genomes]
rs59572944	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59662452	0.96[AFR][1000 genomes]
rs61024611	1.00[EUR][1000 genomes]
rs7163296	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168603	1.00[EUR][1000 genomes]
rs7168735	1.00[AMR][1000 genomes]
rs74024162	1.00[AMR][1000 genomes]
rs74024634	1.00[EUR][1000 genomes]
rs74024639	1.00[EUR][1000 genomes]
rs74024642	1.00[EUR][1000 genomes]
rs8042617	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv904407	chr15:76869929-77121196	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv457206	chr15:76971456-77121196	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv570110	chr15:76971456-77121196	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77073000-77125000	Weak transcription	Pancreas	Pancrea
2	chr15:77085400-77125000	Weak transcription	HSMM	muscle
3	chr15:77086400-77111000	Weak transcription	Thymus	Thymus
4	chr15:77092800-77124800	Weak transcription	Ovary	ovary
5	chr15:77093200-77124800	Weak transcription	Primary B cells from cord blood	blood
6	chr15:77096200-77116400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:77096400-77113400	Weak transcription	Dnd41	blood
8	chr15:77096400-77116400	Weak transcription	Brain Angular Gyrus	brain
9	chr15:77096600-77124800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:77097000-77113200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr15:77097000-77113200	Weak transcription	Primary T cells from cord blood	blood
12	chr15:77101200-77111000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:77101200-77124800	Weak transcription	Aorta	Aorta
14	chr15:77105000-77113600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:77108000-77116600	Weak transcription	Left Ventricle	heart
16	chr15:77108000-77123600	Weak transcription	Psoas Muscle	Psoas
17	chr15:77108200-77111000	Weak transcription	Fetal Intestine Small	intestine
18	chr15:77108200-77123400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:77109400-77111000	Weak transcription	Spleen	Spleen
20	chr15:77109400-77112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:77110400-77111000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr15:77110400-77111200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:77110400-77111400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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