Variant report

Variant	rs74024634
Chromosome Location	chr15:77195695-77195696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77195051..77197848-chr15:77221697..77224553,2	MCF-7	breast:
2	chr15:77195486..77197689-chr15:77712877..77715018,2	K562	blood:
3	chr15:77194744..77199863-chr15:77220881..77225601,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140382	Chromatin interaction
ENSG00000117906	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12101854	1.00[EUR][1000 genomes]
rs16968490	1.00[EUR][1000 genomes]
rs16968545	1.00[EUR][1000 genomes]
rs2629032	1.00[EUR][1000 genomes]
rs28502726	1.00[EUR][1000 genomes]
rs28574883	1.00[EUR][1000 genomes]
rs28757741	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28804114	1.00[EUR][1000 genomes]
rs55682754	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55737539	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57365998	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57366798	1.00[EUR][1000 genomes]
rs58934799	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59572944	1.00[EUR][1000 genomes]
rs61024611	1.00[EUR][1000 genomes]
rs7163296	1.00[EUR][1000 genomes]
rs7168603	1.00[EUR][1000 genomes]
rs74024627	1.00[EUR][1000 genomes]
rs74024639	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024642	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8042617	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv1803942	chr15:77151005-77210457	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:77140800-77195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:77142000-77195800	Weak transcription	Right Ventricle	heart
5	chr15:77146400-77196400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:77168600-77196800	Weak transcription	Pancreas	Pancrea
7	chr15:77168600-77196800	Weak transcription	Spleen	Spleen
8	chr15:77175600-77196800	Weak transcription	Aorta	Aorta
9	chr15:77175600-77196800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:77176000-77195800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:77176000-77196800	Weak transcription	Ovary	ovary
12	chr15:77176200-77195800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr15:77179400-77196000	Weak transcription	Thymus	Thymus
14	chr15:77180000-77196800	Weak transcription	Lung	lung
15	chr15:77184400-77195800	Weak transcription	Primary T cells from cord blood	blood
16	chr15:77186800-77195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:77189200-77196800	Weak transcription	Gastric	stomach
18	chr15:77190200-77196800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:77190200-77196800	Weak transcription	Esophagus	oesophagus
20	chr15:77191000-77196800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:77191200-77195800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:77191200-77195800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:77191600-77196600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:77191800-77195800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:77191800-77196000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:77192000-77196600	Weak transcription	Fetal Stomach	stomach
27	chr15:77193000-77195800	Weak transcription	Brain Anterior Caudate	brain
28	chr15:77193000-77196800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:77193200-77195800	Weak transcription	Fetal Thymus	thymus
30	chr15:77193200-77195800	Weak transcription	Right Atrium	heart
31	chr15:77193200-77196000	Weak transcription	Fetal Brain Female	brain
32	chr15:77194600-77196000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr15:77194800-77195800	Weak transcription	Small Intestine	intestine
34	chr15:77194800-77196000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:77194800-77196800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:77194800-77197400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr15:77195000-77195800	Enhancers	HUVEC	blood vessel
38	chr15:77195000-77196400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:77195000-77196600	Enhancers	Adipose Nuclei	Adipose
40	chr15:77195000-77196800	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr15:77195200-77195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:77195200-77196800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr15:77195200-77196800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:77195400-77195800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:77195400-77195800	Weak transcription	Left Ventricle	heart
46	chr15:77195400-77196000	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr15:77195400-77196000	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr15:77195400-77196600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr15:77195400-77196600	Enhancers	Hela-S3	cervix
50	chr15:77195400-77196800	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links