Variant report

Variant	rs74026416
Chromosome Location	chr15:76585789-76585790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr15:76585738-76585938	HepG2	liver:	n/a	n/a
2	MAFK	chr15:76585706-76586064	IMR90	lung:	n/a	chr15:76585876-76585885
3	MAFK	chr15:76585729-76585963	HepG2	liver:	n/a	chr15:76585876-76585885
4	NFIC	chr15:76585647-76586112	GM12878	blood:	n/a	n/a
5	FOS	chr15:76585670-76586176	HUVEC	blood vessel:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76585221..76587431-chr15:76590533..76592803,2	K562	blood:
2	chr15:76585050..76587534-chr15:76621476..76624273,2	MCF-7	breast:
3	chr15:76575946..76578111-chr15:76585028..76587734,2	MCF-7	breast:
4	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
5	chr15:76584744..76587703-chr15:77223601..77225703,2	K562	blood:
6	chr15:76584959..76587924-chr15:76602984..76605259,2	K562	blood:
7	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:

No data

Variant related genes	Relation type
ETFA	TF binding region
ENSG00000117906	Chromatin interaction
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16968200	1.00[EUR][1000 genomes]
rs28528891	1.00[EUR][1000 genomes]
rs28842532	1.00[EUR][1000 genomes]
rs56944949	1.00[EUR][1000 genomes]
rs6495203	1.00[EUR][1000 genomes]
rs74024107	1.00[EUR][1000 genomes]
rs74024112	1.00[EUR][1000 genomes]
rs74024114	1.00[EUR][1000 genomes]
rs74024115	1.00[EUR][1000 genomes]
rs74026430	1.00[EUR][1000 genomes]
rs74026434	1.00[EUR][1000 genomes]
rs74026435	1.00[EUR][1000 genomes]
rs9944271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
2	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
3	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
4	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
6	chr15:76562600-76586000	Weak transcription	Brain Angular Gyrus	brain
7	chr15:76563000-76586400	Weak transcription	Fetal Heart	heart
8	chr15:76563200-76590800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:76569000-76586400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:76569800-76591600	Weak transcription	Spleen	Spleen
11	chr15:76571200-76586400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:76572600-76585800	Weak transcription	Brain Anterior Caudate	brain
13	chr15:76573200-76592200	Weak transcription	Fetal Kidney	kidney
14	chr15:76573200-76593200	Weak transcription	Right Ventricle	heart
15	chr15:76574800-76590600	Weak transcription	Ovary	ovary
16	chr15:76574800-76591600	Weak transcription	Gastric	stomach
17	chr15:76574800-76591600	Weak transcription	Lung	lung
18	chr15:76574800-76601400	Weak transcription	Pancreas	Pancrea
19	chr15:76574800-76602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:76575000-76586000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:76576000-76585800	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:76576400-76586200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:76576600-76585800	Weak transcription	NH-A	brain
25	chr15:76579000-76586000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:76579200-76586000	Weak transcription	Brain Substantia Nigra	brain
27	chr15:76579200-76586200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:76579200-76591600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:76579200-76602000	Weak transcription	Thymus	Thymus
30	chr15:76579400-76585800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:76579400-76586200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:76579400-76587200	Weak transcription	NHLF	lung
33	chr15:76579400-76591000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:76579400-76592600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr15:76579400-76592800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:76579600-76586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:76579600-76587200	Weak transcription	Psoas Muscle	Psoas
38	chr15:76579600-76592000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:76579600-76592600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr15:76579600-76592600	Weak transcription	Dnd41	blood
41	chr15:76579600-76602000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:76579800-76593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:76580200-76586000	Weak transcription	HSMM	muscle
44	chr15:76580200-76596000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:76580400-76586000	Weak transcription	HSMMtube	muscle
46	chr15:76580400-76586000	Weak transcription	NHDF-Ad	bronchial
47	chr15:76580400-76586200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:76580400-76590400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:76580400-76591400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr15:76580400-76591600	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links