Variant report

Variant	rs7403276
Chromosome Location	chr15:76667777-76667778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76641041..76642748-chr15:76666424..76668885,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11072580	0.89[JPT][hapmap]
rs11072599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1125932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12148786	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12148805	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12437627	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12438077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12439484	0.83[JPT][hapmap]
rs12440815	0.87[ASN][1000 genomes]
rs12441433	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12441550	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12442266	0.82[JPT][hapmap]
rs12443137	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12592171	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12592386	0.89[ASN][1000 genomes]
rs12592420	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12593751	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12594577	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12595738	0.81[JPT][hapmap]
rs12898415	0.88[JPT][hapmap]
rs12899871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12902174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12902414	0.86[ASN][1000 genomes]
rs12907668	0.83[JPT][hapmap]
rs12907805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12908334	0.88[JPT][hapmap]
rs12913096	0.83[JPT][hapmap]
rs12914005	0.83[ASN][1000 genomes]
rs12915248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12916573	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12917430	0.98[ASN][1000 genomes]
rs1587381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1588961	0.83[ASN][1000 genomes]
rs17361504	0.83[JPT][hapmap]
rs17362383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17363713	0.84[ASN][1000 genomes]
rs17364076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17364330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17460201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17461634	0.83[ASN][1000 genomes]
rs1874944	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1875884	0.97[ASN][1000 genomes]
rs1875885	0.97[ASN][1000 genomes]
rs2117369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2164101	0.83[ASN][1000 genomes]
rs2176623	0.83[JPT][hapmap]
rs2404740	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2469542	0.88[JPT][hapmap]
rs284895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3759853	0.83[JPT][hapmap]
rs3866543	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs4079681	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4633676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4886496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4886799	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4886813	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56089215	0.86[ASN][1000 genomes]
rs56216512	0.90[ASN][1000 genomes]
rs58684938	1.00[ASN][1000 genomes]
rs66986092	0.86[ASN][1000 genomes]
rs67232575	0.81[ASN][1000 genomes]
rs67263359	0.86[ASN][1000 genomes]
rs67418609	0.87[ASN][1000 genomes]
rs67888330	0.84[ASN][1000 genomes]
rs67920045	0.85[ASN][1000 genomes]
rs7163946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7164060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7164813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7165025	0.83[ASN][1000 genomes]
rs7179142	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8025134	0.83[ASN][1000 genomes]
rs8030411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8039545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv510667	chr15:76653359-76708310	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76639800-76682600	Weak transcription	Pancreas	Pancrea
2	chr15:76639800-76695400	Weak transcription	Spleen	Spleen
3	chr15:76639800-76727400	Weak transcription	Right Ventricle	heart
4	chr15:76640800-76694600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:76641400-76694600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:76641800-76673400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:76642800-76693800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:76643800-76672400	Weak transcription	Primary B cells from cord blood	blood
9	chr15:76643800-76695000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:76645800-76686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:76646600-76695400	Weak transcription	Ovary	ovary
12	chr15:76648400-76668400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:76648400-76674400	Weak transcription	Brain Substantia Nigra	brain
14	chr15:76650800-76674000	Weak transcription	Small Intestine	intestine
15	chr15:76652400-76675200	Weak transcription	Brain Germinal Matrix	brain
16	chr15:76653400-76672400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:76657400-76674000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:76660000-76670800	Weak transcription	Fetal Thymus	thymus
19	chr15:76660200-76674400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:76660600-76668400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:76660600-76668600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:76660600-76674000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:76660800-76669200	Weak transcription	Stomach Mucosa	stomach
24	chr15:76660800-76693600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:76661000-76668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:76661000-76668600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:76661000-76669200	Weak transcription	Fetal Lung	lung
28	chr15:76661000-76670200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:76661000-76670200	Weak transcription	Esophagus	oesophagus
30	chr15:76661000-76674200	Weak transcription	Lung	lung
31	chr15:76661000-76675600	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:76661000-76676400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:76661000-76685800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:76661000-76695200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:76661000-76695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:76661000-76695400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:76661000-76708600	Weak transcription	Brain Anterior Caudate	brain
38	chr15:76661200-76668400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:76661200-76668400	Weak transcription	Gastric	stomach
40	chr15:76661200-76675400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr15:76661200-76698000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:76661200-76710800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:76661600-76698000	Weak transcription	Dnd41	blood
44	chr15:76661800-76668400	Weak transcription	Fetal Stomach	stomach
45	chr15:76662200-76674800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:76662400-76679000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:76662400-76695400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:76662800-76679200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr15:76663000-76669200	Weak transcription	HepG2	liver
50	chr15:76663000-76670000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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