Variant report

Variant	rs74038736
Chromosome Location	chr16:80197904-80197905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11861602	0.84[AFR][1000 genomes]
rs7198342	1.00[AMR][1000 genomes]
rs8045776	1.00[AMR][1000 genomes]
rs8048829	1.00[AMR][1000 genomes]
rs8059147	1.00[AMR][1000 genomes]
rs8059359	1.00[AMR][1000 genomes]
rs9928047	1.00[AMR][1000 genomes]
rs9928672	1.00[AMR][1000 genomes]
rs9938268	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80193200-80199600	Weak transcription	A549	lung
2	chr16:80193400-80199200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:80193600-80201400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:80193600-80207600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr16:80193800-80201400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:80197000-80200800	Weak transcription	Fetal Kidney	kidney
7	chr16:80197400-80198400	Enhancers	HSMM	muscle
8	chr16:80197600-80198000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr16:80197600-80198000	Enhancers	Pancreas	Pancrea
10	chr16:80197600-80198000	Enhancers	NH-A	brain
11	chr16:80197600-80198400	Enhancers	HSMMtube	muscle
12	chr16:80197600-80198600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr16:80197800-80198200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr16:80197800-80199800	Enhancers	Osteobl	bone
15	chr16:80197800-80200400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links