Variant report

Variant	rs7405439
Chromosome Location	chr16:80623870-80623871
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10395	0.84[EUR][1000 genomes]
rs1562989	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1985288	0.84[EUR][1000 genomes]
rs2316156	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2316157	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4516240	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4547350	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4622522	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7202869	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8053414	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9927579	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9936948	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80615800-80624800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:80619200-80632600	Weak transcription	Hela-S3	cervix
3	chr16:80620000-80624800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr16:80620400-80624400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:80620400-80624800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:80620600-80624800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr16:80620600-80624800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr16:80620800-80625000	Weak transcription	GM12878-XiMat	blood
9	chr16:80621200-80624400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr16:80621200-80628200	Weak transcription	Placenta	Placenta
11	chr16:80623800-80624800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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