Variant report

Variant	rs74056715
Chromosome Location	chr14:65736697-65736698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10131559	1.00[EUR][1000 genomes]
rs1256529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1256532	1.00[EUR][1000 genomes]
rs1256535	1.00[EUR][1000 genomes]
rs1256545	1.00[EUR][1000 genomes]
rs55791657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58419427	1.00[EUR][1000 genomes]
rs59483989	1.00[EUR][1000 genomes]
rs61735911	1.00[EUR][1000 genomes]
rs6573603	1.00[EUR][1000 genomes]
rs7144841	1.00[EUR][1000 genomes]
rs7157687	1.00[EUR][1000 genomes]
rs74056720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74059024	1.00[EUR][1000 genomes]
rs8004406	1.00[EUR][1000 genomes]
rs8014200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	esv1819774	chr14:65732113-65743219	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1824915	chr14:65732465-65742616	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv826967	chr14:65732599-65742647	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1820707	chr14:65734491-65742436	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1823970	chr14:65734491-65742436	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv1817283	chr14:65734510-65743411	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv826968	chr14:65734640-65742879	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv1822602	chr14:65734656-65742616	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv1818699	chr14:65735081-65742816	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv442344	chr14:65735197-65742436	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv1815313	chr14:65735281-65742616	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv817637	chr14:65735357-65740766	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65727400-65749600	Weak transcription	Gastric	stomach
3	chr14:65733800-65742000	Weak transcription	Brain Substantia Nigra	brain
4	chr14:65733800-65742200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65734200-65738600	Enhancers	Stomach Mucosa	stomach
6	chr14:65734600-65736800	Enhancers	HepG2	liver
7	chr14:65735000-65736800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr14:65735000-65742400	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:65735400-65737000	Enhancers	Duodenum Mucosa	Duodenum
10	chr14:65735800-65748600	Weak transcription	GM12878-XiMat	blood
11	chr14:65736200-65748400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:65736600-65736800	Weak transcription	Fetal Intestine Small	intestine
13	chr14:65736600-65737400	Weak transcription	Small Intestine	intestine
14	chr14:65736600-65738200	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links