Variant report

Variant	rs74060251
Chromosome Location	chr14:70110818-70110819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:70110747..70113182-chr14:70129071..70131111,2	MCF-7	breast:
2	chr14:70109436..70111234-chr14:70149871..70151669,2	MCF-7	breast:
3	chr14:70110578..70113027-chr14:70121882..70124631,2	K562	blood:
4	chr14:70110167..70112208-chr14:70116437..70117943,2	MCF-7	breast:
5	chr14:70108653..70111894-chr14:70113537..70117255,5	K562	blood:
6	chr14:70110323..70113249-chr14:70160948..70165525,4	K562	blood:
7	chr14:70093575..70095940-chr14:70109923..70112166,2	K562	blood:
8	chr14:70107632..70111411-chr14:70113640..70118051,5	MCF-7	breast:
9	chr14:70106221..70108070-chr14:70109431..70111866,2	K562	blood:

No data

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11844465	1.00[EUR][1000 genomes]
rs11845658	1.00[EUR][1000 genomes]
rs11849924	1.00[EUR][1000 genomes]
rs12100899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1803419	1.00[EUR][1000 genomes]
rs1957367	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55959724	1.00[EUR][1000 genomes]
rs56051240	1.00[EUR][1000 genomes]
rs56808476	1.00[EUR][1000 genomes]
rs56859443	1.00[EUR][1000 genomes]
rs57781039	1.00[EUR][1000 genomes]
rs58053579	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58140746	1.00[EUR][1000 genomes]
rs58503693	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58583730	1.00[EUR][1000 genomes]
rs60085780	1.00[EUR][1000 genomes]
rs60835679	1.00[EUR][1000 genomes]
rs61498582	1.00[EUR][1000 genomes]
rs61734222	1.00[EUR][1000 genomes]
rs61745930	1.00[EUR][1000 genomes]
rs7144597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060205	1.00[EUR][1000 genomes]
rs74060220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060234	1.00[EUR][1000 genomes]
rs74060252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060256	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060258	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060261	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060263	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060267	1.00[EUR][1000 genomes]
rs74060270	1.00[EUR][1000 genomes]
rs74060281	1.00[EUR][1000 genomes]
rs74060283	1.00[EUR][1000 genomes]
rs74060286	1.00[EUR][1000 genomes]
rs74060294	1.00[EUR][1000 genomes]
rs74060297	1.00[EUR][1000 genomes]
rs74061847	1.00[EUR][1000 genomes]
rs74061848	1.00[EUR][1000 genomes]
rs74061850	1.00[EUR][1000 genomes]
rs74061851	1.00[EUR][1000 genomes]
rs74061853	1.00[EUR][1000 genomes]
rs74061856	1.00[EUR][1000 genomes]
rs74061857	1.00[EUR][1000 genomes]
rs74061864	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70104800-70125600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:70105000-70113800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:70105200-70115400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:70105400-70114000	Weak transcription	Fetal Stomach	stomach
5	chr14:70105600-70111400	Weak transcription	Fetal Lung	lung
6	chr14:70105600-70115600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:70105800-70113800	Weak transcription	Osteobl	bone
8	chr14:70105800-70114600	Weak transcription	Placenta	Placenta
9	chr14:70105800-70115600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:70106200-70113200	ZNF genes & repeats	GM12878-XiMat	blood
11	chr14:70106600-70115000	Weak transcription	Fetal Kidney	kidney
12	chr14:70108000-70113800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:70108200-70114000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:70108400-70121200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:70109000-70114600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:70109000-70121400	Enhancers	Stomach Mucosa	stomach
17	chr14:70109200-70112200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:70109400-70112000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr14:70109400-70112000	Enhancers	Duodenum Mucosa	Duodenum
20	chr14:70109400-70112000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr14:70109400-70112200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr14:70109400-70112400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:70109400-70115400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:70109400-70121200	Enhancers	Small Intestine	intestine
25	chr14:70109600-70111000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr14:70109600-70111000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:70109600-70111000	Enhancers	HepG2	liver
28	chr14:70109600-70111200	Enhancers	Primary T cells from cord blood	blood
29	chr14:70109600-70111400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:70109600-70111400	Enhancers	Hela-S3	cervix
31	chr14:70109600-70111600	Enhancers	Fetal Heart	heart
32	chr14:70109600-70111800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:70109600-70111800	Enhancers	Liver	Liver
34	chr14:70109600-70112000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:70109600-70112000	Enhancers	Brain Anterior Caudate	brain
36	chr14:70109600-70112000	Enhancers	Fetal Intestine Large	intestine
37	chr14:70109600-70112000	Enhancers	Psoas Muscle	Psoas
38	chr14:70109600-70112200	Enhancers	Brain Angular Gyrus	brain
39	chr14:70109600-70112200	Enhancers	HMEC	breast
40	chr14:70109600-70113000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:70109600-70113000	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr14:70109600-70113000	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr14:70109600-70121200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr14:70109800-70111000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr14:70109800-70111200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr14:70109800-70111800	Enhancers	Primary T cells fromperipheralblood	blood
47	chr14:70109800-70111800	Enhancers	Rectal Smooth Muscle	rectum
48	chr14:70109800-70112000	Enhancers	Fetal Intestine Small	intestine
49	chr14:70109800-70112000	Enhancers	NHEK	skin
50	chr14:70109800-70112200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links