Variant report

Variant	rs74060281
Chromosome Location	chr14:70158229-70158230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70129166..70132900-chr14:70155782..70158446,3	K562	blood:
2	chr14:70130032..70132900-chr14:70156054..70158446,2	K562	blood:
3	chr14:70149467..70151102-chr14:70156172..70158882,2	MCF-7	breast:
4	chr14:70105984..70107760-chr14:70157737..70159410,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11844446	1.00[EUR][1000 genomes]
rs11844465	1.00[EUR][1000 genomes]
rs11845465	1.00[EUR][1000 genomes]
rs11845528	1.00[EUR][1000 genomes]
rs11845658	1.00[EUR][1000 genomes]
rs11847510	1.00[EUR][1000 genomes]
rs11849924	1.00[EUR][1000 genomes]
rs12100899	1.00[EUR][1000 genomes]
rs1803419	1.00[EUR][1000 genomes]
rs1957367	1.00[EUR][1000 genomes]
rs55959724	1.00[EUR][1000 genomes]
rs56051240	1.00[EUR][1000 genomes]
rs56808476	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56859443	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57781039	1.00[EUR][1000 genomes]
rs58053579	1.00[EUR][1000 genomes]
rs58140746	1.00[EUR][1000 genomes]
rs58503693	1.00[EUR][1000 genomes]
rs58583730	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60085780	1.00[EUR][1000 genomes]
rs60835679	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61498582	1.00[EUR][1000 genomes]
rs61734222	1.00[EUR][1000 genomes]
rs61745930	1.00[EUR][1000 genomes]
rs7144597	1.00[EUR][1000 genomes]
rs73286939	1.00[EUR][1000 genomes]
rs73286943	1.00[EUR][1000 genomes]
rs74060205	1.00[EUR][1000 genomes]
rs74060220	1.00[EUR][1000 genomes]
rs74060234	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74060251	1.00[EUR][1000 genomes]
rs74060252	1.00[EUR][1000 genomes]
rs74060256	1.00[EUR][1000 genomes]
rs74060258	1.00[EUR][1000 genomes]
rs74060261	1.00[EUR][1000 genomes]
rs74060263	1.00[EUR][1000 genomes]
rs74060267	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74060270	1.00[EUR][1000 genomes]
rs74060283	1.00[EUR][1000 genomes]
rs74060286	1.00[EUR][1000 genomes]
rs74060294	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74060297	1.00[EUR][1000 genomes]
rs74060575	1.00[EUR][1000 genomes]
rs74061847	1.00[EUR][1000 genomes]
rs74061848	1.00[EUR][1000 genomes]
rs74061850	1.00[EUR][1000 genomes]
rs74061851	1.00[EUR][1000 genomes]
rs74061853	1.00[EUR][1000 genomes]
rs74061856	1.00[EUR][1000 genomes]
rs74061857	1.00[EUR][1000 genomes]
rs74061864	1.00[EUR][1000 genomes]
rs8009986	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70150200-70161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:70150800-70159800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:70152200-70159800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:70152400-70159600	Weak transcription	Aorta	Aorta
5	chr14:70152400-70159800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr14:70152600-70159400	Weak transcription	Colonic Mucosa	Colon
7	chr14:70152600-70159800	Weak transcription	NHLF	lung
8	chr14:70152800-70158800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr14:70152800-70158800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr14:70152800-70159400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr14:70152800-70159600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr14:70152800-70159600	Weak transcription	Pancreas	Pancrea
13	chr14:70153000-70158800	Weak transcription	Liver	Liver
14	chr14:70153000-70158800	Weak transcription	Fetal Intestine Large	intestine
15	chr14:70153000-70158800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:70153200-70159400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:70153400-70158800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:70153400-70159200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:70153400-70159400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:70153400-70159400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:70153400-70159600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:70153600-70158400	Weak transcription	Small Intestine	intestine
23	chr14:70153600-70159800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:70153600-70160400	Weak transcription	NHEK	skin
25	chr14:70153800-70160600	Weak transcription	HMEC	breast
26	chr14:70155000-70158400	Strong transcription	Primary B cells from cord blood	blood
27	chr14:70155200-70158800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:70155200-70159200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:70155200-70160400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr14:70155200-70161400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr14:70155200-70162000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr14:70155400-70158800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:70155400-70158800	Weak transcription	K562	blood
34	chr14:70155400-70159200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr14:70155400-70159600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:70155400-70159600	Weak transcription	Fetal Lung	lung
37	chr14:70155400-70160400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:70155600-70158400	Strong transcription	Thymus	Thymus
39	chr14:70155600-70159000	Weak transcription	Fetal Brain Male	brain
40	chr14:70155600-70159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:70155600-70159200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:70155600-70159400	Weak transcription	Colon Smooth Muscle	Colon
43	chr14:70155600-70159600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:70155600-70159600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:70155800-70158800	Weak transcription	Brain Anterior Caudate	brain
46	chr14:70155800-70158800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:70155800-70158800	Weak transcription	Fetal Brain Female	brain
48	chr14:70155800-70159200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr14:70155800-70159400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr14:70155800-70159400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links