Variant report

Variant	rs74060297
Chromosome Location	chr14:70182674-70182675
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70181314..70183326-chr14:70188869..70190637,2	K562	blood:
2	chr14:70078362..70080995-chr14:70181831..70184954,3	MCF-7	breast:
3	chr14:70175565..70179211-chr14:70180408..70183769,4	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11844446	1.00[EUR][1000 genomes]
rs11844465	1.00[EUR][1000 genomes]
rs11845465	1.00[EUR][1000 genomes]
rs11845528	1.00[EUR][1000 genomes]
rs11845658	1.00[EUR][1000 genomes]
rs11847510	1.00[EUR][1000 genomes]
rs11849924	1.00[EUR][1000 genomes]
rs12100899	1.00[EUR][1000 genomes]
rs1803419	1.00[EUR][1000 genomes]
rs1957367	1.00[EUR][1000 genomes]
rs55959724	1.00[EUR][1000 genomes]
rs56051240	1.00[EUR][1000 genomes]
rs56808476	1.00[EUR][1000 genomes]
rs56859443	1.00[EUR][1000 genomes]
rs57781039	1.00[EUR][1000 genomes]
rs58053579	1.00[EUR][1000 genomes]
rs58140746	1.00[EUR][1000 genomes]
rs58503693	1.00[EUR][1000 genomes]
rs58583730	1.00[EUR][1000 genomes]
rs60085780	1.00[EUR][1000 genomes]
rs60835679	1.00[EUR][1000 genomes]
rs61498582	1.00[EUR][1000 genomes]
rs61734222	1.00[EUR][1000 genomes]
rs61745930	1.00[EUR][1000 genomes]
rs7144597	1.00[EUR][1000 genomes]
rs73286939	1.00[EUR][1000 genomes]
rs73286943	1.00[EUR][1000 genomes]
rs74060205	1.00[EUR][1000 genomes]
rs74060220	1.00[EUR][1000 genomes]
rs74060234	1.00[EUR][1000 genomes]
rs74060251	1.00[EUR][1000 genomes]
rs74060252	1.00[EUR][1000 genomes]
rs74060256	1.00[EUR][1000 genomes]
rs74060258	1.00[EUR][1000 genomes]
rs74060261	1.00[EUR][1000 genomes]
rs74060263	1.00[EUR][1000 genomes]
rs74060267	1.00[EUR][1000 genomes]
rs74060270	1.00[EUR][1000 genomes]
rs74060281	1.00[EUR][1000 genomes]
rs74060283	1.00[EUR][1000 genomes]
rs74060286	1.00[EUR][1000 genomes]
rs74060294	1.00[EUR][1000 genomes]
rs74060575	1.00[EUR][1000 genomes]
rs74061847	1.00[EUR][1000 genomes]
rs74061848	1.00[EUR][1000 genomes]
rs74061850	1.00[EUR][1000 genomes]
rs74061851	1.00[EUR][1000 genomes]
rs74061853	1.00[EUR][1000 genomes]
rs74061856	1.00[EUR][1000 genomes]
rs74061857	1.00[EUR][1000 genomes]
rs74061864	1.00[EUR][1000 genomes]
rs8009986	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70163400-70183400	Weak transcription	Hela-S3	cervix
2	chr14:70177200-70184000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr14:70177400-70184200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:70178200-70187000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:70178400-70183200	Weak transcription	Aorta	Aorta
6	chr14:70178600-70182800	Weak transcription	Dnd41	blood
7	chr14:70179400-70182800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:70179600-70182800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr14:70179600-70182800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:70179800-70182800	Enhancers	HMEC	breast
11	chr14:70179800-70182800	Weak transcription	HSMM	muscle
12	chr14:70179800-70183000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr14:70180200-70182800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:70180400-70186200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:70180400-70193400	Weak transcription	Pancreas	Pancrea
16	chr14:70180800-70182800	Weak transcription	Liver	Liver
17	chr14:70180800-70182800	Weak transcription	A549	lung
18	chr14:70181000-70182800	Weak transcription	Fetal Kidney	kidney
19	chr14:70181400-70182800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr14:70181400-70183800	Enhancers	Right Atrium	heart
21	chr14:70181400-70184000	Enhancers	Esophagus	oesophagus
22	chr14:70181400-70193600	Weak transcription	Primary T cells from cord blood	blood
23	chr14:70181600-70182800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:70181600-70182800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:70181600-70182800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:70181600-70182800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:70181600-70182800	Weak transcription	Fetal Intestine Large	intestine
28	chr14:70181600-70182800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:70181600-70183000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:70181600-70183000	Strong transcription	Fetal Intestine Small	intestine
31	chr14:70181600-70183200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:70181600-70184200	Enhancers	Fetal Muscle Trunk	muscle
33	chr14:70181600-70185000	Weak transcription	HepG2	liver
34	chr14:70181600-70185600	Enhancers	Fetal Thymus	thymus
35	chr14:70181600-70186200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:70181600-70186200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:70181600-70186200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr14:70181600-70186400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr14:70181600-70186400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:70181600-70186400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:70181600-70188000	Enhancers	Fetal Muscle Leg	muscle
42	chr14:70181600-70193400	Weak transcription	Thymus	Thymus
43	chr14:70182000-70182800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:70182000-70182800	Enhancers	Stomach Smooth Muscle	stomach
45	chr14:70182000-70183200	Enhancers	Colonic Mucosa	Colon
46	chr14:70182000-70183600	Enhancers	Fetal Brain Male	brain
47	chr14:70182000-70184000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:70182000-70184600	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr14:70182000-70185800	Weak transcription	GM12878-XiMat	blood
50	chr14:70182000-70186600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links