Variant report

Variant	rs74060555
Chromosome Location	chr14:70283126-70283127
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs74060547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061443	1.00[AMR][1000 genomes]
rs8020504	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70280000-70284000	Weak transcription	Liver	Liver
2	chr14:70280000-70285200	Weak transcription	Hela-S3	cervix
3	chr14:70281200-70285200	Weak transcription	HepG2	liver
4	chr14:70281600-70283200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:70282400-70283200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:70282400-70287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:70282600-70284200	Bivalent Enhancer	Placenta	Placenta
8	chr14:70283000-70283600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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