Variant report
| Variant | rs74060671 |
|---|---|
| Chromosome Location | chr12:10953025-10953026 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:10951582..10953191-chr12:10954611..10956191,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000121377 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs55883403 | 1.00[AMR][1000 genomes] |
| rs7295252 | 1.00[AMR][1000 genomes] |
| rs7306214 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7310666 | 0.87[AMR][1000 genomes] |
| rs74060691 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060692 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74060702 | 0.87[AMR][1000 genomes] |
| rs74062405 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049362 | chr12:10893573-11018850 | Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv898776 | chr12:10909412-11032045 | Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044642 | chr12:10910774-10954384 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2474817 | chr12:10952542-10953752 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv976762 | chr12:10952631-10955306 | Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
